Results 21 - 40 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 48959 | 0.68 | 0.989116 |
Target: 5'- uCUGCuGCCACUGUugCGUaACGUAGacGUCCu -3' miRNA: 3'- -GAUG-CGGUGGUA--GCAaUGCGUU--UAGG- -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 77450 | 0.68 | 0.989116 |
Target: 5'- -cGCGCCGCCAaaagagUAUGCAuuccccaaAAUCCg -3' miRNA: 3'- gaUGCGGUGGUagca--AUGCGU--------UUAGG- -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 16080 | 0.68 | 0.989116 |
Target: 5'- aUACGCCAUUaAUCag-GCGCAuuUCCc -3' miRNA: 3'- gAUGCGGUGG-UAGcaaUGCGUuuAGG- -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 26638 | 0.68 | 0.987553 |
Target: 5'- -aGCGCCGUCAgaaCaUUACGCAuAUCCg -3' miRNA: 3'- gaUGCGGUGGUa--GcAAUGCGUuUAGG- -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 73303 | 0.68 | 0.987553 |
Target: 5'- -gACGUUuuUAUCGUUACGCA--UCCc -3' miRNA: 3'- gaUGCGGugGUAGCAAUGCGUuuAGG- -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 37094 | 0.68 | 0.985822 |
Target: 5'- ---aGCCGCCAUUGUUuCGCu-GUCg -3' miRNA: 3'- gaugCGGUGGUAGCAAuGCGuuUAGg -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 26881 | 0.68 | 0.983913 |
Target: 5'- -aGCGCCAUCAUCGccggugUUAUGCu-GUCg -3' miRNA: 3'- gaUGCGGUGGUAGC------AAUGCGuuUAGg -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 85744 | 0.69 | 0.981815 |
Target: 5'- -aGCGCCGCCcg-GUUACGUcuGUUCu -3' miRNA: 3'- gaUGCGGUGGuagCAAUGCGuuUAGG- -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 71727 | 0.7 | 0.96815 |
Target: 5'- uUGCuGCCccuGCCAUCc-UGCGCAuAUCCa -3' miRNA: 3'- gAUG-CGG---UGGUAGcaAUGCGUuUAGG- -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 13983 | 0.7 | 0.96815 |
Target: 5'- uUGCGCCACCG-CGcuggUGgGCAGAUaggCCa -3' miRNA: 3'- gAUGCGGUGGUaGCa---AUgCGUUUA---GG- -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 29441 | 0.7 | 0.961037 |
Target: 5'- -aGCGCCGCCgAUCGc-GCGCGcg-CCg -3' miRNA: 3'- gaUGCGGUGG-UAGCaaUGCGUuuaGG- -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 30254 | 0.7 | 0.961037 |
Target: 5'- -aACGCCAucuuUCGUUGUUGCGCGGuugCUg -3' miRNA: 3'- gaUGCGGU----GGUAGCAAUGCGUUua-GG- -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 22875 | 0.71 | 0.938657 |
Target: 5'- -aGCGUCGCCAUCG-UGCGUuca-CCg -3' miRNA: 3'- gaUGCGGUGGUAGCaAUGCGuuuaGG- -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 90908 | 0.71 | 0.933359 |
Target: 5'- -cGCGCgCGCUAU-GUUGCGUcgGUCCg -3' miRNA: 3'- gaUGCG-GUGGUAgCAAUGCGuuUAGG- -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 35104 | 0.71 | 0.92778 |
Target: 5'- gUACGCCugACCAUCGgugccaUugGCu-GUCCu -3' miRNA: 3'- gAUGCGG--UGGUAGCa-----AugCGuuUAGG- -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 62122 | 0.72 | 0.902669 |
Target: 5'- -cGCGCUuaaaagcgauACCcUUGUUACGCAAgcGUCCa -3' miRNA: 3'- gaUGCGG----------UGGuAGCAAUGCGUU--UAGG- -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 13576 | 0.73 | 0.86518 |
Target: 5'- aUACGCCGCCAgUUGUUcuucaguaagugGCGCA--UCCu -3' miRNA: 3'- gAUGCGGUGGU-AGCAA------------UGCGUuuAGG- -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 36992 | 0.75 | 0.802648 |
Target: 5'- uUGCGCUGCCGUCGgcgcggUugGCGu-UCCu -3' miRNA: 3'- gAUGCGGUGGUAGCa-----AugCGUuuAGG- -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 19380 | 0.78 | 0.655021 |
Target: 5'- gCUGgGCCACUggCGg-GCGCGAGUCCg -3' miRNA: 3'- -GAUgCGGUGGuaGCaaUGCGUUUAGG- -5' |
|||||||
27316 | 5' | -48.1 | NC_005856.1 | + | 3350 | 0.79 | 0.566691 |
Target: 5'- -cACGCCaggaACCAUCGUUAC-UAAGUCCa -3' miRNA: 3'- gaUGCGG----UGGUAGCAAUGcGUUUAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home