Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
27317 | 3' | -48.2 | NC_005856.1 | + | 87132 | 0.66 | 0.995947 |
Target: 5'- aCCGCC-AUUUauacuggcGAGGAUGccGCAGCGACc -3' miRNA: 3'- -GGUGGcUAAAa-------CUCUUGC--UGUCGCUG- -5' |
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27317 | 3' | -48.2 | NC_005856.1 | + | 13435 | 0.66 | 0.995947 |
Target: 5'- gCCACCagcgaaGAcGACGACAGUGAUg -3' miRNA: 3'- -GGUGGcuaaaaCUcUUGCUGUCGCUG- -5' |
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27317 | 3' | -48.2 | NC_005856.1 | + | 40081 | 0.66 | 0.995947 |
Target: 5'- aCCAuCCGAgcagUUGGGGguuCGAUucGGCGAUg -3' miRNA: 3'- -GGU-GGCUaa--AACUCUu--GCUG--UCGCUG- -5' |
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27317 | 3' | -48.2 | NC_005856.1 | + | 80433 | 0.67 | 0.995229 |
Target: 5'- uUugCGAagaUGAGAAUGAaauugcCAGCGGCa -3' miRNA: 3'- gGugGCUaaaACUCUUGCU------GUCGCUG- -5' |
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27317 | 3' | -48.2 | NC_005856.1 | + | 54627 | 0.67 | 0.995229 |
Target: 5'- gCGCCGAUUUUu-GAGCcGCAGUcaGACg -3' miRNA: 3'- gGUGGCUAAAAcuCUUGcUGUCG--CUG- -5' |
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27317 | 3' | -48.2 | NC_005856.1 | + | 75467 | 0.67 | 0.991262 |
Target: 5'- aCCGCCGAcaUUGGcAAUGugAGUGAa -3' miRNA: 3'- -GGUGGCUaaAACUcUUGCugUCGCUg -5' |
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27317 | 3' | -48.2 | NC_005856.1 | + | 78231 | 0.68 | 0.989946 |
Target: 5'- gCCGCCGGgcUUGAGGAUGAgucuCAGgguaUGACu -3' miRNA: 3'- -GGUGGCUaaAACUCUUGCU----GUC----GCUG- -5' |
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27317 | 3' | -48.2 | NC_005856.1 | + | 57857 | 0.7 | 0.951222 |
Target: 5'- uCCGgCGcUUUgGAGAACGACAG-GGCa -3' miRNA: 3'- -GGUgGCuAAAaCUCUUGCUGUCgCUG- -5' |
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27317 | 3' | -48.2 | NC_005856.1 | + | 61874 | 0.71 | 0.925667 |
Target: 5'- gCUACgGAUUcgcGcGAACGAUAGCGGCa -3' miRNA: 3'- -GGUGgCUAAaa-CuCUUGCUGUCGCUG- -5' |
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27317 | 3' | -48.2 | NC_005856.1 | + | 30645 | 0.72 | 0.908982 |
Target: 5'- cCCACUGAauauauggguaaagGAGAGCGACuGUGGCa -3' miRNA: 3'- -GGUGGCUaaaa----------CUCUUGCUGuCGCUG- -5' |
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27317 | 3' | -48.2 | NC_005856.1 | + | 22671 | 1.13 | 0.006761 |
Target: 5'- uCCACCGAUUUUGAGAACGACAGCGACu -3' miRNA: 3'- -GGUGGCUAAAACUCUUGCUGUCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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