miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27318 5' -56 NC_005856.1 + 65996 0.69 0.652072
Target:  5'- aCGCauaaGCgCGAGCAUAUCCUCUGccugccGCGCg -3'
miRNA:   3'- gGCGg---CG-GUUUGUAUAGGGGGU------CGCG- -5'
27318 5' -56 NC_005856.1 + 77449 0.7 0.589228
Target:  5'- gCGCCGCCAAAagaGUAugcaUUCCCCAaaaucCGCa -3'
miRNA:   3'- gGCGGCGGUUUg--UAU----AGGGGGUc----GCG- -5'
27318 5' -56 NC_005856.1 + 9942 0.71 0.568458
Target:  5'- gUCGUCGauuucaaaaCAAACAgUGUUCCCCAGgGCg -3'
miRNA:   3'- -GGCGGCg--------GUUUGU-AUAGGGGGUCgCG- -5'
27318 5' -56 NC_005856.1 + 84082 0.71 0.527533
Target:  5'- uCCGCaGCCAGGCucguguuuUAUCCCUugcgaucucaCAGCGCc -3'
miRNA:   3'- -GGCGgCGGUUUGu-------AUAGGGG----------GUCGCG- -5'
27318 5' -56 NC_005856.1 + 14318 0.73 0.458873
Target:  5'- uUGCCGCCGGGCGcGUag-CCAGCGCa -3'
miRNA:   3'- gGCGGCGGUUUGUaUAgggGGUCGCG- -5'
27318 5' -56 NC_005856.1 + 85488 0.74 0.386655
Target:  5'- aUCGauaaUGCCAAGCGUAUgCCCCGGCu- -3'
miRNA:   3'- -GGCg---GCGGUUUGUAUAgGGGGUCGcg -5'
27318 5' -56 NC_005856.1 + 84231 0.69 0.683384
Target:  5'- aCG-CGCCAcuuCAaucuUAUCUUCCAGCGCg -3'
miRNA:   3'- gGCgGCGGUuu-GU----AUAGGGGGUCGCG- -5'
27318 5' -56 NC_005856.1 + 15162 0.68 0.744542
Target:  5'- uCUGuUCGUCGGGCAccgauacggUGUCgUCCAGCGCa -3'
miRNA:   3'- -GGC-GGCGGUUUGU---------AUAGgGGGUCGCG- -5'
27318 5' -56 NC_005856.1 + 64758 0.68 0.744542
Target:  5'- gCCGCCGCCGGugGgaugaaaaCaCCUGGUGCc -3'
miRNA:   3'- -GGCGGCGGUUugUauag----G-GGGUCGCG- -5'
27318 5' -56 NC_005856.1 + 45270 0.67 0.764206
Target:  5'- aC-CCGCgAAAUAUgAUCCCCUgacauggacGGCGCa -3'
miRNA:   3'- gGcGGCGgUUUGUA-UAGGGGG---------UCGCG- -5'
27318 5' -56 NC_005856.1 + 84524 0.67 0.792754
Target:  5'- gCCGCgcucuuucacuuCGCCuuuCAUgcAUCCCCCuuacccauGCGCg -3'
miRNA:   3'- -GGCG------------GCGGuuuGUA--UAGGGGGu-------CGCG- -5'
27318 5' -56 NC_005856.1 + 32699 0.67 0.792754
Target:  5'- cCCGCCGCgaaCGGAUAUGUa--CgGGCGCa -3'
miRNA:   3'- -GGCGGCG---GUUUGUAUAgggGgUCGCG- -5'
27318 5' -56 NC_005856.1 + 85165 0.66 0.819934
Target:  5'- uUCGCCG-UAGAUggAUUCCCacaGGCGCu -3'
miRNA:   3'- -GGCGGCgGUUUGuaUAGGGGg--UCGCG- -5'
27318 5' -56 NC_005856.1 + 18029 0.66 0.828647
Target:  5'- aUCGCCGCUAA----AUCCCgCCAGguugcCGCu -3'
miRNA:   3'- -GGCGGCGGUUuguaUAGGG-GGUC-----GCG- -5'
27318 5' -56 NC_005856.1 + 15873 0.66 0.83208
Target:  5'- -gGCCGCCGGGCAUAgUgCUgaacaaaucgaacagCAGCGCc -3'
miRNA:   3'- ggCGGCGGUUUGUAUaGgGG---------------GUCGCG- -5'
27318 5' -56 NC_005856.1 + 17562 0.74 0.378166
Target:  5'- gCCGCCuaagaaGCCGGACAguuguaccgGUgCCCCuGCGCg -3'
miRNA:   3'- -GGCGG------CGGUUUGUa--------UAgGGGGuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.