miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27318 5' -56 NC_005856.1 + 41439 0.69 0.64159
Target:  5'- gCCaGCUGCCGuuGC-UGUCCCCUuuccucguGCGCg -3'
miRNA:   3'- -GG-CGGCGGUu-UGuAUAGGGGGu-------CGCG- -5'
27318 5' -56 NC_005856.1 + 43267 0.68 0.711228
Target:  5'- aCCaCCGCguAGCAuuccuacaaguuucUuugCCCCCAGUGCg -3'
miRNA:   3'- -GGcGGCGguUUGU--------------Aua-GGGGGUCGCG- -5'
27318 5' -56 NC_005856.1 + 44685 0.68 0.734549
Target:  5'- -aGCCaGCCGGAUGUGUgCCgCCAGCu- -3'
miRNA:   3'- ggCGG-CGGUUUGUAUAgGG-GGUCGcg -5'
27318 5' -56 NC_005856.1 + 45270 0.67 0.764206
Target:  5'- aC-CCGCgAAAUAUgAUCCCCUgacauggacGGCGCa -3'
miRNA:   3'- gGcGGCGgUUUGUA-UAGGGGG---------UCGCG- -5'
27318 5' -56 NC_005856.1 + 48694 0.7 0.610129
Target:  5'- aCUGCCuguauGCCGAcACGggagaUCCCCGGCGCa -3'
miRNA:   3'- -GGCGG-----CGGUU-UGUaua--GGGGGUCGCG- -5'
27318 5' -56 NC_005856.1 + 50773 0.69 0.672978
Target:  5'- cCCGUagCGCCGGGCAUAUCCUgUcgcaauGUGCa -3'
miRNA:   3'- -GGCG--GCGGUUUGUAUAGGGgGu-----CGCG- -5'
27318 5' -56 NC_005856.1 + 64758 0.68 0.744542
Target:  5'- gCCGCCGCCGGugGgaugaaaaCaCCUGGUGCc -3'
miRNA:   3'- -GGCGGCGGUUugUauag----G-GGGUCGCG- -5'
27318 5' -56 NC_005856.1 + 65996 0.69 0.652072
Target:  5'- aCGCauaaGCgCGAGCAUAUCCUCUGccugccGCGCg -3'
miRNA:   3'- gGCGg---CG-GUUUGUAUAGGGGGU------CGCG- -5'
27318 5' -56 NC_005856.1 + 77449 0.7 0.589228
Target:  5'- gCGCCGCCAAAagaGUAugcaUUCCCCAaaaucCGCa -3'
miRNA:   3'- gGCGGCGGUUUg--UAU----AGGGGGUc----GCG- -5'
27318 5' -56 NC_005856.1 + 78129 0.67 0.764206
Target:  5'- cCCGgCGgCGAGC--GUCacaaCCCAGCGUa -3'
miRNA:   3'- -GGCgGCgGUUUGuaUAGg---GGGUCGCG- -5'
27318 5' -56 NC_005856.1 + 83366 0.68 0.734549
Target:  5'- gCCGCCGCCcgGAAUugGUCCgUCgaguugagugGGCGCa -3'
miRNA:   3'- -GGCGGCGG--UUUGuaUAGGgGG----------UCGCG- -5'
27318 5' -56 NC_005856.1 + 84082 0.71 0.527533
Target:  5'- uCCGCaGCCAGGCucguguuuUAUCCCUugcgaucucaCAGCGCc -3'
miRNA:   3'- -GGCGgCGGUUUGu-------AUAGGGG----------GUCGCG- -5'
27318 5' -56 NC_005856.1 + 84231 0.69 0.683384
Target:  5'- aCG-CGCCAcuuCAaucuUAUCUUCCAGCGCg -3'
miRNA:   3'- gGCgGCGGUuu-GU----AUAGGGGGUCGCG- -5'
27318 5' -56 NC_005856.1 + 84524 0.67 0.792754
Target:  5'- gCCGCgcucuuucacuuCGCCuuuCAUgcAUCCCCCuuacccauGCGCg -3'
miRNA:   3'- -GGCG------------GCGGuuuGUA--UAGGGGGu-------CGCG- -5'
27318 5' -56 NC_005856.1 + 85165 0.66 0.819934
Target:  5'- uUCGCCG-UAGAUggAUUCCCacaGGCGCu -3'
miRNA:   3'- -GGCGGCgGUUUGuaUAGGGGg--UCGCG- -5'
27318 5' -56 NC_005856.1 + 85488 0.74 0.386655
Target:  5'- aUCGauaaUGCCAAGCGUAUgCCCCGGCu- -3'
miRNA:   3'- -GGCg---GCGGUUUGUAUAgGGGGUCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.