miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2732 3' -57.9 NC_001491.2 + 5163 0.66 0.869678
Target:  5'- aGGUgCGGUCCcacgcGGCCGAgGCugCGcGg -3'
miRNA:   3'- aCCAgGCUAGGcu---UCGGCU-CGugGC-C- -5'
2732 3' -57.9 NC_001491.2 + 137241 0.66 0.86237
Target:  5'- ---cCCGGUCCGAgcAGCgGAGCguuACCGu -3'
miRNA:   3'- accaGGCUAGGCU--UCGgCUCG---UGGCc -5'
2732 3' -57.9 NC_001491.2 + 49508 0.66 0.861628
Target:  5'- -uGUCCGccauaCCGAGGCCG-GCcauggccguugccGCCGGg -3'
miRNA:   3'- acCAGGCua---GGCUUCGGCuCG-------------UGGCC- -5'
2732 3' -57.9 NC_001491.2 + 117657 0.66 0.854865
Target:  5'- aUGGcuucuccgCCGggCCGGAGCCcu-CACCGGc -3'
miRNA:   3'- -ACCa-------GGCuaGGCUUCGGcucGUGGCC- -5'
2732 3' -57.9 NC_001491.2 + 146433 0.66 0.854865
Target:  5'- cGGaCCGAgggcgCCGggGCCucGGGCuguuGCUGGc -3'
miRNA:   3'- aCCaGGCUa----GGCuuCGG--CUCG----UGGCC- -5'
2732 3' -57.9 NC_001491.2 + 142856 0.66 0.852576
Target:  5'- cGGuUUCGAUCCGuuacauuuucccaCGGGUACCGGg -3'
miRNA:   3'- aCC-AGGCUAGGCuucg---------GCUCGUGGCC- -5'
2732 3' -57.9 NC_001491.2 + 15620 0.66 0.847168
Target:  5'- gGGUCCc--UCGAAGCgGuGCGcCCGGa -3'
miRNA:   3'- aCCAGGcuaGGCUUCGgCuCGU-GGCC- -5'
2732 3' -57.9 NC_001491.2 + 55674 0.66 0.847168
Target:  5'- aGGUCCGAaUCGAcgcuCCGGGCgGCCGu -3'
miRNA:   3'- aCCAGGCUaGGCUuc--GGCUCG-UGGCc -5'
2732 3' -57.9 NC_001491.2 + 126579 0.66 0.847168
Target:  5'- aGGUCCucGUCCGcGGCC--GCACCGc -3'
miRNA:   3'- aCCAGGc-UAGGCuUCGGcuCGUGGCc -5'
2732 3' -57.9 NC_001491.2 + 116697 0.67 0.82299
Target:  5'- cGG-CCGcUCCGggGaCCaGGGCGCCc- -3'
miRNA:   3'- aCCaGGCuAGGCuuC-GG-CUCGUGGcc -5'
2732 3' -57.9 NC_001491.2 + 140109 0.67 0.814591
Target:  5'- cGGaCgCGcUCCGGAGC--GGCGCCGGg -3'
miRNA:   3'- aCCaG-GCuAGGCUUCGgcUCGUGGCC- -5'
2732 3' -57.9 NC_001491.2 + 89651 0.67 0.814591
Target:  5'- aUGGUCCacaGUCguuucuugcgagCGggGuuGAGCGCuCGGg -3'
miRNA:   3'- -ACCAGGc--UAG------------GCuuCggCUCGUG-GCC- -5'
2732 3' -57.9 NC_001491.2 + 5681 0.67 0.788479
Target:  5'- gUGG-CUGGgaaaagCCGGAGCCGGaaaacGUGCCGGc -3'
miRNA:   3'- -ACCaGGCUa-----GGCUUCGGCU-----CGUGGCC- -5'
2732 3' -57.9 NC_001491.2 + 115838 0.68 0.770388
Target:  5'- cGGcgcUCCGAgcccCUGGAGCCGgcGGCccagGCCGGa -3'
miRNA:   3'- aCC---AGGCUa---GGCUUCGGC--UCG----UGGCC- -5'
2732 3' -57.9 NC_001491.2 + 147390 0.68 0.770388
Target:  5'- cUGGgccgCCGGcUCCaGggGCUcgGAGCGCCGc -3'
miRNA:   3'- -ACCa---GGCU-AGG-CuuCGG--CUCGUGGCc -5'
2732 3' -57.9 NC_001491.2 + 58369 0.68 0.732867
Target:  5'- cGGU-CGAUCC-AGGCC-AGCACCGc -3'
miRNA:   3'- aCCAgGCUAGGcUUCGGcUCGUGGCc -5'
2732 3' -57.9 NC_001491.2 + 123557 0.69 0.703824
Target:  5'- cGGUCCGAU---GGGCCGAGggcaGCUGGa -3'
miRNA:   3'- aCCAGGCUAggcUUCGGCUCg---UGGCC- -5'
2732 3' -57.9 NC_001491.2 + 147068 0.69 0.703824
Target:  5'- gGGUCUGAaggcuccccUCCGcGGCCGcGGaGCCGGa -3'
miRNA:   3'- aCCAGGCU---------AGGCuUCGGC-UCgUGGCC- -5'
2732 3' -57.9 NC_001491.2 + 61654 0.69 0.703824
Target:  5'- uUGGcucCCGAUCCaGGAGCC-AGCuGCUGGa -3'
miRNA:   3'- -ACCa--GGCUAGG-CUUCGGcUCG-UGGCC- -5'
2732 3' -57.9 NC_001491.2 + 77814 0.69 0.694017
Target:  5'- cUGGUaCCGGaauUuuGAAcGCCucuGAGCGCCGGu -3'
miRNA:   3'- -ACCA-GGCU---AggCUU-CGG---CUCGUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.