Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
27320 | 5' | -49.2 | NC_005856.1 | + | 36071 | 0.66 | 0.993052 |
Target: 5'- uCGUGcCACUCCAGCCAAugaauaacUCAccUUCgCCa -3' miRNA: 3'- cGUAU-GUGGGGUCGGUU--------AGUa-AAG-GG- -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 19734 | 0.66 | 0.993052 |
Target: 5'- cCGUACGCUCUgucGCCuccaccAUCAUUUCCa -3' miRNA: 3'- cGUAUGUGGGGu--CGGu-----UAGUAAAGGg -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 32660 | 0.66 | 0.993052 |
Target: 5'- uCGUGcCACUCCAGCCAAugaauaacUCAccUUCgCCa -3' miRNA: 3'- cGUAU-GUGGGGUCGGUU--------AGUa-AAG-GG- -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 64426 | 0.66 | 0.992842 |
Target: 5'- aGCAUugACagaucagcauaaCCAGCCAA-CAggUCCg -3' miRNA: 3'- -CGUAugUGg-----------GGUCGGUUaGUaaAGGg -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 41506 | 0.66 | 0.992627 |
Target: 5'- cGCAU-C-CCCCGGCCAuUCAUgaauuuguugaCCa -3' miRNA: 3'- -CGUAuGuGGGGUCGGUuAGUAaag--------GG- -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 71823 | 0.66 | 0.991949 |
Target: 5'- gGCAgg-GCUUCAGCCGuccgaucucAUCAUUgUCCCg -3' miRNA: 3'- -CGUaugUGGGGUCGGU---------UAGUAA-AGGG- -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 92185 | 0.66 | 0.99058 |
Target: 5'- gGCGUGuucaCCAGCCAAcgccuccUCAUUUCCg -3' miRNA: 3'- -CGUAUguggGGUCGGUU-------AGUAAAGGg -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 92125 | 0.66 | 0.989328 |
Target: 5'- cCAaACACCCUuGCCAGUCAc--CUCa -3' miRNA: 3'- cGUaUGUGGGGuCGGUUAGUaaaGGG- -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 28932 | 0.66 | 0.989328 |
Target: 5'- gGUAUcGCGCCaCCagugcgauugAGCCGAUCAaucUCCCc -3' miRNA: 3'- -CGUA-UGUGG-GG----------UCGGUUAGUaa-AGGG- -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 84089 | 0.66 | 0.98779 |
Target: 5'- aCGUACuuCCgCAGCCAGgcUCGUguuuuaUCCCu -3' miRNA: 3'- cGUAUGu-GGgGUCGGUU--AGUAa-----AGGG- -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 55375 | 0.67 | 0.986788 |
Target: 5'- aGCgGUACGCCCUGgauacgacgggcuacGCCAGUCGggcagcaggCCCa -3' miRNA: 3'- -CG-UAUGUGGGGU---------------CGGUUAGUaaa------GGG- -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 48935 | 0.67 | 0.982137 |
Target: 5'- aGC-UACGCCagcaCCAGCCGugaauAUCA--UCCCc -3' miRNA: 3'- -CGuAUGUGG----GGUCGGU-----UAGUaaAGGG- -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 92831 | 0.67 | 0.979872 |
Target: 5'- uCGUACAUUagaUCAGCCG-UCgAUUUCCCa -3' miRNA: 3'- cGUAUGUGG---GGUCGGUuAG-UAAAGGG- -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 85475 | 0.68 | 0.965257 |
Target: 5'- aGCGUAUGCCCCGGCUuAAUguUUaaUgCCg -3' miRNA: 3'- -CGUAUGUGGGGUCGG-UUAguAA--AgGG- -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 27931 | 0.69 | 0.957719 |
Target: 5'- aGC-UGCGCCauuaaCAGCUcuUCGUUUUCCu -3' miRNA: 3'- -CGuAUGUGGg----GUCGGuuAGUAAAGGG- -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 15801 | 0.69 | 0.939462 |
Target: 5'- ---aACA-UCCGGCCAAUCAUcgCCCc -3' miRNA: 3'- cguaUGUgGGGUCGGUUAGUAaaGGG- -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 81140 | 0.71 | 0.882202 |
Target: 5'- ---aGCGCCCUGGCUAAU-AUUUCCUg -3' miRNA: 3'- cguaUGUGGGGUCGGUUAgUAAAGGG- -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 34237 | 0.74 | 0.754174 |
Target: 5'- aCAgACACCuCCAGCCuaccaguaaCAUUUCCCg -3' miRNA: 3'- cGUaUGUGG-GGUCGGuua------GUAAAGGG- -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 73784 | 0.74 | 0.733167 |
Target: 5'- gGCAUAUAacuCCCCGGCC--UCGUUgaaCCCg -3' miRNA: 3'- -CGUAUGU---GGGGUCGGuuAGUAAa--GGG- -5' |
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27320 | 5' | -49.2 | NC_005856.1 | + | 70355 | 0.79 | 0.504413 |
Target: 5'- aUAUGCGCCCCAGaCAGUCGcUUCCa -3' miRNA: 3'- cGUAUGUGGGGUCgGUUAGUaAAGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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