miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27357 3' -38.7 NC_005857.1 + 33059 0.67 1
Target:  5'- aCCGggGAAAaGAcCGGAggcGAGGAGCCUc- -3'
miRNA:   3'- -GGCuuUUUU-CU-GCUU---UUUUUUGGGcu -5'
27357 3' -38.7 NC_005857.1 + 12155 0.66 1
Target:  5'- gCGuuuuu-GGCGAAGcAGGACCUGAg -3'
miRNA:   3'- gGCuuuuuuCUGCUUUuUUUUGGGCU- -5'
27357 3' -38.7 NC_005857.1 + 11450 0.66 1
Target:  5'- aCCGAAAAA-GAUuaccAGAcuGCCCGAa -3'
miRNA:   3'- -GGCUUUUUuCUGcuu-UUUuuUGGGCU- -5'
27357 3' -38.7 NC_005857.1 + 8886 0.66 1
Target:  5'- gCCGAccgcuGGGGCGAGccu-GACCCa- -3'
miRNA:   3'- -GGCUuuu--UUCUGCUUuuuuUUGGGcu -5'
27357 3' -38.7 NC_005857.1 + 16279 0.66 1
Target:  5'- cCCGAugguaAGGGAGGCGAuggcauGGAGCCUc- -3'
miRNA:   3'- -GGCU-----UUUUUCUGCUuuu---UUUUGGGcu -5'
27357 3' -38.7 NC_005857.1 + 13544 0.66 1
Target:  5'- aCGAuu-AAGGCGAuac-AAGCCCa- -3'
miRNA:   3'- gGCUuuuUUCUGCUuuuuUUUGGGcu -5'
27357 3' -38.7 NC_005857.1 + 44817 0.66 1
Target:  5'- uUCGuguuGuuGAGACGGGAA-AAACCCa- -3'
miRNA:   3'- -GGCu---UuuUUCUGCUUUUuUUUGGGcu -5'
27357 3' -38.7 NC_005857.1 + 21866 0.66 1
Target:  5'- aCGAAGcu-GACGAAu---GACCUGGc -3'
miRNA:   3'- gGCUUUuuuCUGCUUuuuuUUGGGCU- -5'
27357 3' -38.7 NC_005857.1 + 1346 0.67 1
Target:  5'- gCUGGAcguAGGuGACGAcuGGAcuGACCCGAa -3'
miRNA:   3'- -GGCUU---UUUuCUGCU--UUUuuUUGGGCU- -5'
27357 3' -38.7 NC_005857.1 + 44069 0.67 1
Target:  5'- --uGGAAAAGGCGAGGAGuacCCCGc -3'
miRNA:   3'- ggcUUUUUUCUGCUUUUUuuuGGGCu -5'
27357 3' -38.7 NC_005857.1 + 6503 0.68 1
Target:  5'- aCUGAcAuuGGAUGAGGuGAAAACCCa- -3'
miRNA:   3'- -GGCUuUuuUCUGCUUU-UUUUUGGGcu -5'
27357 3' -38.7 NC_005857.1 + 44340 0.67 1
Target:  5'- gUCGAAAugcuguauGAGAUGAGAGAGAAggCCGGu -3'
miRNA:   3'- -GGCUUUu-------UUCUGCUUUUUUUUg-GGCU- -5'
27357 3' -38.7 NC_005857.1 + 11638 0.67 1
Target:  5'- gCGcAGGGAGACGAGAGGAucGACuucaCCGGc -3'
miRNA:   3'- gGCuUUUUUCUGCUUUUUU--UUG----GGCU- -5'
27357 3' -38.7 NC_005857.1 + 22356 0.67 1
Target:  5'- uCCGcu-GGAGGCGuuucc-GGCCCGAa -3'
miRNA:   3'- -GGCuuuUUUCUGCuuuuuuUUGGGCU- -5'
27357 3' -38.7 NC_005857.1 + 11665 0.68 1
Target:  5'- gCUGAugcAGAAGGCGAcGAAAGAgUCGGc -3'
miRNA:   3'- -GGCUu--UUUUCUGCUuUUUUUUgGGCU- -5'
27357 3' -38.7 NC_005857.1 + 9215 0.68 1
Target:  5'- aCGcGAAAAAGACGGAAGAc-GCCUa- -3'
miRNA:   3'- gGC-UUUUUUCUGCUUUUUuuUGGGcu -5'
27357 3' -38.7 NC_005857.1 + 49516 0.68 1
Target:  5'- uCCGGGAAAAGcCGAc-AGGAACgCGGa -3'
miRNA:   3'- -GGCUUUUUUCuGCUuuUUUUUGgGCU- -5'
27357 3' -38.7 NC_005857.1 + 41928 0.68 1
Target:  5'- gCGAAGGAguucggcgcuaaauGGAUGguAGAGAACCCu- -3'
miRNA:   3'- gGCUUUUU--------------UCUGCuuUUUUUUGGGcu -5'
27357 3' -38.7 NC_005857.1 + 6895 0.68 1
Target:  5'- gCCGGAAAAguuAGuuGAAucggGAAAGGCCUGGg -3'
miRNA:   3'- -GGCUUUUU---UCugCUU----UUUUUUGGGCU- -5'
27357 3' -38.7 NC_005857.1 + 19967 0.69 0.999999
Target:  5'- gCCGAAGuucGAG-CGggGAAAuGugCCGAc -3'
miRNA:   3'- -GGCUUUu--UUCuGCuuUUUU-UugGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.