miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27372 5' -51.5 NC_005857.1 + 9539 0.66 0.874474
Target:  5'- gCCga--UGCCAUCAGCuuaAGCGCCu--- -3'
miRNA:   3'- -GGaaugACGGUGGUUG---UCGCGGuaau -5'
27372 5' -51.5 NC_005857.1 + 20514 0.66 0.874474
Target:  5'- ---aGgaGCCugCGGCuGCGCCGUg- -3'
miRNA:   3'- ggaaUgaCGGugGUUGuCGCGGUAau -5'
27372 5' -51.5 NC_005857.1 + 5509 0.66 0.874474
Target:  5'- gCUUACUGCCuugGgCGGCAGaCGCUgcaGUUAa -3'
miRNA:   3'- gGAAUGACGG---UgGUUGUC-GCGG---UAAU- -5'
27372 5' -51.5 NC_005857.1 + 24140 0.66 0.874474
Target:  5'- ---aGgaGCCugCGGCuGCGCCGUg- -3'
miRNA:   3'- ggaaUgaCGGugGUUGuCGCGGUAau -5'
27372 5' -51.5 NC_005857.1 + 18329 0.66 0.866181
Target:  5'- gCUgguCUGCCGCCu---GCGCCGc-- -3'
miRNA:   3'- gGAau-GACGGUGGuuguCGCGGUaau -5'
27372 5' -51.5 NC_005857.1 + 16565 0.66 0.866181
Target:  5'- gCCUUACuggUGCUGCUugAAUAGCGCgGUUu -3'
miRNA:   3'- -GGAAUG---ACGGUGG--UUGUCGCGgUAAu -5'
27372 5' -51.5 NC_005857.1 + 49413 0.66 0.857621
Target:  5'- cCCaUGCcGCCACCGAgGGUGCg---- -3'
miRNA:   3'- -GGaAUGaCGGUGGUUgUCGCGguaau -5'
27372 5' -51.5 NC_005857.1 + 12071 0.66 0.848802
Target:  5'- cCCgUACUGCCAgaAGCAGCuCCGg-- -3'
miRNA:   3'- -GGaAUGACGGUggUUGUCGcGGUaau -5'
27372 5' -51.5 NC_005857.1 + 9672 0.66 0.830428
Target:  5'- uCCgUACUGguUCAaCGACAGCGCCAg-- -3'
miRNA:   3'- -GGaAUGAC--GGUgGUUGUCGCGGUaau -5'
27372 5' -51.5 NC_005857.1 + 17682 0.67 0.820893
Target:  5'- cCCggaUAC-GCCAaucaGACAGCGCCAUc- -3'
miRNA:   3'- -GGa--AUGaCGGUgg--UUGUCGCGGUAau -5'
27372 5' -51.5 NC_005857.1 + 29924 0.67 0.811141
Target:  5'- gCUUAguuCUGCCGagcaaccucuauCCAGCAGCGCUg--- -3'
miRNA:   3'- gGAAU---GACGGU------------GGUUGUCGCGGuaau -5'
27372 5' -51.5 NC_005857.1 + 23586 0.67 0.801183
Target:  5'- uUUUACUGCCGCUAcccGCAcucuGCGuCCAUUu -3'
miRNA:   3'- gGAAUGACGGUGGU---UGU----CGC-GGUAAu -5'
27372 5' -51.5 NC_005857.1 + 3222 0.67 0.801183
Target:  5'- --aUACccuCCugCAGCAGCGCCAc-- -3'
miRNA:   3'- ggaAUGac-GGugGUUGUCGCGGUaau -5'
27372 5' -51.5 NC_005857.1 + 19959 0.67 0.801183
Target:  5'- uUUUACUGCCGCUAcccGCAcucuGCGuCCAUUu -3'
miRNA:   3'- gGAAUGACGGUGGU---UGU----CGC-GGUAAu -5'
27372 5' -51.5 NC_005857.1 + 15412 0.67 0.791032
Target:  5'- gCUUgaGCUGCCACCuuu-GCGCCc--- -3'
miRNA:   3'- gGAA--UGACGGUGGuuguCGCGGuaau -5'
27372 5' -51.5 NC_005857.1 + 49969 0.67 0.790006
Target:  5'- ----cCUGCCAgCCGaaacggcACAGCGCCAUc- -3'
miRNA:   3'- ggaauGACGGU-GGU-------UGUCGCGGUAau -5'
27372 5' -51.5 NC_005857.1 + 46306 0.68 0.769138
Target:  5'- gCCUUuCUGUUaaacaguGCCuGCAGCGCCAg-- -3'
miRNA:   3'- -GGAAuGACGG-------UGGuUGUCGCGGUaau -5'
27372 5' -51.5 NC_005857.1 + 20568 0.68 0.748738
Target:  5'- uCC-UGCUGCCAUUAAauuucuGCGCCGUc- -3'
miRNA:   3'- -GGaAUGACGGUGGUUgu----CGCGGUAau -5'
27372 5' -51.5 NC_005857.1 + 21166 0.69 0.693051
Target:  5'- uCCUUGCUGCguaACCGuguucuGCAGCGUCu--- -3'
miRNA:   3'- -GGAAUGACGg--UGGU------UGUCGCGGuaau -5'
27372 5' -51.5 NC_005857.1 + 47902 0.7 0.612715
Target:  5'- cCCgUGCUGCCuuGCUGAUAGCGUCGg-- -3'
miRNA:   3'- -GGaAUGACGG--UGGUUGUCGCGGUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.