Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27377 | 5' | -48.1 | NC_005857.1 | + | 5742 | 0.67 | 0.935758 |
Target: 5'- gGGUaGACUUUAUuaccguUGCCGucGCGCAAg -3' miRNA: 3'- -CCGaUUGAAAUG------GCGGUuuCGCGUUg -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 9061 | 0.68 | 0.910698 |
Target: 5'- aGGCgcAUUUUcAUCGCCAGGGCGgCGGa -3' miRNA: 3'- -CCGauUGAAA-UGGCGGUUUCGC-GUUg -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 10370 | 0.69 | 0.90365 |
Target: 5'- cGcCUGGCUUUcCCGCC-AGGCaGCGAUa -3' miRNA: 3'- cC-GAUUGAAAuGGCGGuUUCG-CGUUG- -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 27348 | 0.69 | 0.90365 |
Target: 5'- aGCauuACUUUGCCuGUUuuGGGGCGCAACg -3' miRNA: 3'- cCGau-UGAAAUGG-CGG--UUUCGCGUUG- -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 8475 | 0.69 | 0.888632 |
Target: 5'- uGCUGAUuaUUUGCCGCCAGcauuAGCacCGGCa -3' miRNA: 3'- cCGAUUG--AAAUGGCGGUU----UCGc-GUUG- -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 32360 | 0.69 | 0.880673 |
Target: 5'- gGGUUAGCggggugGCCGCaugaaucAGGUGCAGCu -3' miRNA: 3'- -CCGAUUGaaa---UGGCGgu-----UUCGCGUUG- -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 19189 | 0.7 | 0.863888 |
Target: 5'- cGCUGAUUUUACUGgCCu--GCGCAc- -3' miRNA: 3'- cCGAUUGAAAUGGC-GGuuuCGCGUug -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 18330 | 0.66 | 0.974262 |
Target: 5'- aGCUGGuCU--GCCGCCu--GCGCcGCu -3' miRNA: 3'- cCGAUU-GAaaUGGCGGuuuCGCGuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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