miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27377 5' -48.1 NC_005857.1 + 8627 0.72 0.731896
Target:  5'- uGGCUGAa---ACCGCaaaagcuGGCGCAGCg -3'
miRNA:   3'- -CCGAUUgaaaUGGCGguu----UCGCGUUG- -5'
27377 5' -48.1 NC_005857.1 + 8880 0.75 0.603966
Target:  5'- uGGCUGGCcg-ACCGCUggGGCG-AGCc -3'
miRNA:   3'- -CCGAUUGaaaUGGCGGuuUCGCgUUG- -5'
27377 5' -48.1 NC_005857.1 + 42516 0.79 0.396333
Target:  5'- uGGCUGACUggcuacACCGCCuGGGUGUGGCu -3'
miRNA:   3'- -CCGAUUGAaa----UGGCGGuUUCGCGUUG- -5'
27377 5' -48.1 NC_005857.1 + 32691 1.14 0.002136
Target:  5'- gGGCUAACUUUACCGCCAAAGCGCAACg -3'
miRNA:   3'- -CCGAUUGAAAUGGCGGUUUCGCGUUG- -5'
27377 5' -48.1 NC_005857.1 + 38183 0.66 0.975445
Target:  5'- cGCUGcuucaagcaaugaauACggaucGCUGCCAAAGCGCuccGCa -3'
miRNA:   3'- cCGAU---------------UGaaa--UGGCGGUUUCGCGu--UG- -5'
27377 5' -48.1 NC_005857.1 + 4932 0.66 0.974262
Target:  5'- cGGCccGGCagUUAUCGUUAAAGCGgAGCc -3'
miRNA:   3'- -CCGa-UUGa-AAUGGCGGUUUCGCgUUG- -5'
27377 5' -48.1 NC_005857.1 + 18481 0.72 0.720564
Target:  5'- cGGCUGGCUgagACCGgCAAAccaUGCGACa -3'
miRNA:   3'- -CCGAUUGAaa-UGGCgGUUUc--GCGUUG- -5'
27377 5' -48.1 NC_005857.1 + 4980 0.66 0.975445
Target:  5'- aGGCaUGACUccauggugaugucgaUUGCCGCU---GCGCAGg -3'
miRNA:   3'- -CCG-AUUGA---------------AAUGGCGGuuuCGCGUUg -5'
27377 5' -48.1 NC_005857.1 + 4288 0.66 0.971122
Target:  5'- gGGCUGACgUUUACCacgaucuuCCGGGGUGaUAACa -3'
miRNA:   3'- -CCGAUUG-AAAUGGc-------GGUUUCGC-GUUG- -5'
27377 5' -48.1 NC_005857.1 + 51480 0.68 0.929966
Target:  5'- aGGC-AGCU--GCUGCCAGGGgGUAGg -3'
miRNA:   3'- -CCGaUUGAaaUGGCGGUUUCgCGUUg -5'
27377 5' -48.1 NC_005857.1 + 47342 0.66 0.967717
Target:  5'- uGGCgauGCUguuUUGCCGCCu--GCGUuaucuGGCg -3'
miRNA:   3'- -CCGau-UGA---AAUGGCGGuuuCGCG-----UUG- -5'
27377 5' -48.1 NC_005857.1 + 14225 0.66 0.964036
Target:  5'- cGCUGGCUgagGUgGCCAuauagauGGUGCAGCa -3'
miRNA:   3'- cCGAUUGAaa-UGgCGGUu------UCGCGUUG- -5'
27377 5' -48.1 NC_005857.1 + 12996 0.67 0.946403
Target:  5'- uGGC-AGCUUUgauucAUCGCCAccGGCgGCGACg -3'
miRNA:   3'- -CCGaUUGAAA-----UGGCGGUu-UCG-CGUUG- -5'
27377 5' -48.1 NC_005857.1 + 8100 0.67 0.941237
Target:  5'- cGGCUucAGC---GCCGCCAgcGCGUcGCc -3'
miRNA:   3'- -CCGA--UUGaaaUGGCGGUuuCGCGuUG- -5'
27377 5' -48.1 NC_005857.1 + 9187 0.7 0.83667
Target:  5'- uGGCUGcguuaaggugcaGCccgACCGCUAAAGaUGCGACg -3'
miRNA:   3'- -CCGAU------------UGaaaUGGCGGUUUC-GCGUUG- -5'
27377 5' -48.1 NC_005857.1 + 47514 0.7 0.863888
Target:  5'- cGGCgugcCUUUGCCuGCCGAGGUGUu-- -3'
miRNA:   3'- -CCGauu-GAAAUGG-CGGUUUCGCGuug -5'
27377 5' -48.1 NC_005857.1 + 19189 0.7 0.863888
Target:  5'- cGCUGAUUUUACUGgCCu--GCGCAc- -3'
miRNA:   3'- cCGAUUGAAAUGGC-GGuuuCGCGUug -5'
27377 5' -48.1 NC_005857.1 + 32360 0.69 0.880673
Target:  5'- gGGUUAGCggggugGCCGCaugaaucAGGUGCAGCu -3'
miRNA:   3'- -CCGAUUGaaa---UGGCGgu-----UUCGCGUUG- -5'
27377 5' -48.1 NC_005857.1 + 5742 0.67 0.935758
Target:  5'- gGGUaGACUUUAUuaccguUGCCGucGCGCAAg -3'
miRNA:   3'- -CCGaUUGAAAUG------GCGGUuuCGCGUUg -5'
27377 5' -48.1 NC_005857.1 + 27348 0.69 0.90365
Target:  5'- aGCauuACUUUGCCuGUUuuGGGGCGCAACg -3'
miRNA:   3'- cCGau-UGAAAUGG-CGG--UUUCGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.