miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27377 5' -48.1 NC_005857.1 + 32691 1.14 0.002136
Target:  5'- gGGCUAACUUUACCGCCAAAGCGCAACg -3'
miRNA:   3'- -CCGAUUGAAAUGGCGGUUUCGCGUUG- -5'
27377 5' -48.1 NC_005857.1 + 42516 0.79 0.396333
Target:  5'- uGGCUGACUggcuacACCGCCuGGGUGUGGCu -3'
miRNA:   3'- -CCGAUUGAaa----UGGCGGuUUCGCGUUG- -5'
27377 5' -48.1 NC_005857.1 + 8880 0.75 0.603966
Target:  5'- uGGCUGGCcg-ACCGCUggGGCG-AGCc -3'
miRNA:   3'- -CCGAUUGaaaUGGCGGuuUCGCgUUG- -5'
27377 5' -48.1 NC_005857.1 + 18481 0.72 0.720564
Target:  5'- cGGCUGGCUgagACCGgCAAAccaUGCGACa -3'
miRNA:   3'- -CCGAUUGAaa-UGGCgGUUUc--GCGUUG- -5'
27377 5' -48.1 NC_005857.1 + 37590 0.72 0.731896
Target:  5'- cGGCUGGCagcgUAUCGaCC--AGCGCGGCg -3'
miRNA:   3'- -CCGAUUGaa--AUGGC-GGuuUCGCGUUG- -5'
27377 5' -48.1 NC_005857.1 + 8627 0.72 0.731896
Target:  5'- uGGCUGAa---ACCGCaaaagcuGGCGCAGCg -3'
miRNA:   3'- -CCGAUUgaaaUGGCGguu----UCGCGUUG- -5'
27377 5' -48.1 NC_005857.1 + 1180 0.7 0.827092
Target:  5'- gGGCUAucgccgucaccuGgUUUAcCCGCCAuAGGCGCGAa -3'
miRNA:   3'- -CCGAU------------UgAAAU-GGCGGU-UUCGCGUUg -5'
27377 5' -48.1 NC_005857.1 + 9187 0.7 0.83667
Target:  5'- uGGCUGcguuaaggugcaGCccgACCGCUAAAGaUGCGACg -3'
miRNA:   3'- -CCGAU------------UGaaaUGGCGGUUUC-GCGUUG- -5'
27377 5' -48.1 NC_005857.1 + 47514 0.7 0.863888
Target:  5'- cGGCgugcCUUUGCCuGCCGAGGUGUu-- -3'
miRNA:   3'- -CCGauu-GAAAUGG-CGGUUUCGCGuug -5'
27377 5' -48.1 NC_005857.1 + 19189 0.7 0.863888
Target:  5'- cGCUGAUUUUACUGgCCu--GCGCAc- -3'
miRNA:   3'- cCGAUUGAAAUGGC-GGuuuCGCGUug -5'
27377 5' -48.1 NC_005857.1 + 32360 0.69 0.880673
Target:  5'- gGGUUAGCggggugGCCGCaugaaucAGGUGCAGCu -3'
miRNA:   3'- -CCGAUUGaaa---UGGCGgu-----UUCGCGUUG- -5'
27377 5' -48.1 NC_005857.1 + 8475 0.69 0.888632
Target:  5'- uGCUGAUuaUUUGCCGCCAGcauuAGCacCGGCa -3'
miRNA:   3'- cCGAUUG--AAAUGGCGGUU----UCGc-GUUG- -5'
27377 5' -48.1 NC_005857.1 + 27348 0.69 0.90365
Target:  5'- aGCauuACUUUGCCuGUUuuGGGGCGCAACg -3'
miRNA:   3'- cCGau-UGAAAUGG-CGG--UUUCGCGUUG- -5'
27377 5' -48.1 NC_005857.1 + 10370 0.69 0.90365
Target:  5'- cGcCUGGCUUUcCCGCC-AGGCaGCGAUa -3'
miRNA:   3'- cC-GAUUGAAAuGGCGGuUUCG-CGUUG- -5'
27377 5' -48.1 NC_005857.1 + 9061 0.68 0.910698
Target:  5'- aGGCgcAUUUUcAUCGCCAGGGCGgCGGa -3'
miRNA:   3'- -CCGauUGAAA-UGGCGGUUUCGC-GUUg -5'
27377 5' -48.1 NC_005857.1 + 51480 0.68 0.929966
Target:  5'- aGGC-AGCU--GCUGCCAGGGgGUAGg -3'
miRNA:   3'- -CCGaUUGAaaUGGCGGUUUCgCGUUg -5'
27377 5' -48.1 NC_005857.1 + 5742 0.67 0.935758
Target:  5'- gGGUaGACUUUAUuaccguUGCCGucGCGCAAg -3'
miRNA:   3'- -CCGaUUGAAAUG------GCGGUuuCGCGUUg -5'
27377 5' -48.1 NC_005857.1 + 8100 0.67 0.941237
Target:  5'- cGGCUucAGC---GCCGCCAgcGCGUcGCc -3'
miRNA:   3'- -CCGA--UUGaaaUGGCGGUuuCGCGuUG- -5'
27377 5' -48.1 NC_005857.1 + 12996 0.67 0.946403
Target:  5'- uGGC-AGCUUUgauucAUCGCCAccGGCgGCGACg -3'
miRNA:   3'- -CCGaUUGAAA-----UGGCGGUu-UCG-CGUUG- -5'
27377 5' -48.1 NC_005857.1 + 15417 0.66 0.960071
Target:  5'- cGCUGGCUUgaGCUGCCAccuuuGCGCc-- -3'
miRNA:   3'- cCGAUUGAAa-UGGCGGUuu---CGCGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.