Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27377 | 5' | -48.1 | NC_005857.1 | + | 1180 | 0.7 | 0.827092 |
Target: 5'- gGGCUAucgccgucaccuGgUUUAcCCGCCAuAGGCGCGAa -3' miRNA: 3'- -CCGAU------------UgAAAU-GGCGGU-UUCGCGUUg -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 4288 | 0.66 | 0.971122 |
Target: 5'- gGGCUGACgUUUACCacgaucuuCCGGGGUGaUAACa -3' miRNA: 3'- -CCGAUUG-AAAUGGc-------GGUUUCGC-GUUG- -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 4932 | 0.66 | 0.974262 |
Target: 5'- cGGCccGGCagUUAUCGUUAAAGCGgAGCc -3' miRNA: 3'- -CCGa-UUGa-AAUGGCGGUUUCGCgUUG- -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 4980 | 0.66 | 0.975445 |
Target: 5'- aGGCaUGACUccauggugaugucgaUUGCCGCU---GCGCAGg -3' miRNA: 3'- -CCG-AUUGA---------------AAUGGCGGuuuCGCGUUg -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 5742 | 0.67 | 0.935758 |
Target: 5'- gGGUaGACUUUAUuaccguUGCCGucGCGCAAg -3' miRNA: 3'- -CCGaUUGAAAUG------GCGGUuuCGCGUUg -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 8100 | 0.67 | 0.941237 |
Target: 5'- cGGCUucAGC---GCCGCCAgcGCGUcGCc -3' miRNA: 3'- -CCGA--UUGaaaUGGCGGUuuCGCGuUG- -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 8475 | 0.69 | 0.888632 |
Target: 5'- uGCUGAUuaUUUGCCGCCAGcauuAGCacCGGCa -3' miRNA: 3'- cCGAUUG--AAAUGGCGGUU----UCGc-GUUG- -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 8627 | 0.72 | 0.731896 |
Target: 5'- uGGCUGAa---ACCGCaaaagcuGGCGCAGCg -3' miRNA: 3'- -CCGAUUgaaaUGGCGguu----UCGCGUUG- -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 8880 | 0.75 | 0.603966 |
Target: 5'- uGGCUGGCcg-ACCGCUggGGCG-AGCc -3' miRNA: 3'- -CCGAUUGaaaUGGCGGuuUCGCgUUG- -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 9061 | 0.68 | 0.910698 |
Target: 5'- aGGCgcAUUUUcAUCGCCAGGGCGgCGGa -3' miRNA: 3'- -CCGauUGAAA-UGGCGGUUUCGC-GUUg -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 9187 | 0.7 | 0.83667 |
Target: 5'- uGGCUGcguuaaggugcaGCccgACCGCUAAAGaUGCGACg -3' miRNA: 3'- -CCGAU------------UGaaaUGGCGGUUUC-GCGUUG- -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 10370 | 0.69 | 0.90365 |
Target: 5'- cGcCUGGCUUUcCCGCC-AGGCaGCGAUa -3' miRNA: 3'- cC-GAUUGAAAuGGCGGuUUCG-CGUUG- -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 12996 | 0.67 | 0.946403 |
Target: 5'- uGGC-AGCUUUgauucAUCGCCAccGGCgGCGACg -3' miRNA: 3'- -CCGaUUGAAA-----UGGCGGUu-UCG-CGUUG- -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 14225 | 0.66 | 0.964036 |
Target: 5'- cGCUGGCUgagGUgGCCAuauagauGGUGCAGCa -3' miRNA: 3'- cCGAUUGAaa-UGgCGGUu------UCGCGUUG- -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 15417 | 0.66 | 0.960071 |
Target: 5'- cGCUGGCUUgaGCUGCCAccuuuGCGCc-- -3' miRNA: 3'- cCGAUUGAAa-UGGCGGUuu---CGCGuug -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 18330 | 0.66 | 0.974262 |
Target: 5'- aGCUGGuCU--GCCGCCu--GCGCcGCu -3' miRNA: 3'- cCGAUU-GAaaUGGCGGuuuCGCGuUG- -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 18481 | 0.72 | 0.720564 |
Target: 5'- cGGCUGGCUgagACCGgCAAAccaUGCGACa -3' miRNA: 3'- -CCGAUUGAaa-UGGCgGUUUc--GCGUUG- -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 19189 | 0.7 | 0.863888 |
Target: 5'- cGCUGAUUUUACUGgCCu--GCGCAc- -3' miRNA: 3'- cCGAUUGAAAUGGC-GGuuuCGCGUug -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 25290 | 0.66 | 0.967717 |
Target: 5'- cGCguacACUgUGCCGUUAAAGCGCc-- -3' miRNA: 3'- cCGau--UGAaAUGGCGGUUUCGCGuug -5' |
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27377 | 5' | -48.1 | NC_005857.1 | + | 27348 | 0.69 | 0.90365 |
Target: 5'- aGCauuACUUUGCCuGUUuuGGGGCGCAACg -3' miRNA: 3'- cCGau-UGAAAUGG-CGG--UUUCGCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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