Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 38923 | 0.66 | 0.773306 |
Target: 5'- gCAugCGCA--GGCAuuuuGCCAGgGCa -3' miRNA: 3'- aGUugGCGUugUCGUucu-CGGUCgCG- -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 42294 | 0.66 | 0.762895 |
Target: 5'- cUAACCGCAGCAGa---AGCCAGaUGa -3' miRNA: 3'- aGUUGGCGUUGUCguucUCGGUC-GCg -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 49475 | 0.66 | 0.752342 |
Target: 5'- -uGGCgGCAugGGCGuuuGGAGCgGGCugGCa -3' miRNA: 3'- agUUGgCGUugUCGU---UCUCGgUCG--CG- -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 23619 | 0.66 | 0.74166 |
Target: 5'- cCGACgGCGugGaGCGaagcgccggaGGAcaacGCCAGCGCg -3' miRNA: 3'- aGUUGgCGUugU-CGU----------UCU----CGGUCGCG- -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 19992 | 0.66 | 0.74166 |
Target: 5'- cCGACgGCGugGaGCGaagcgccggaGGAcaacGCCAGCGCg -3' miRNA: 3'- aGUUGgCGUugU-CGU----------UCU----CGGUCGCG- -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 26778 | 0.66 | 0.730862 |
Target: 5'- cUCGacGCCGC-ACAGCAGcuGCU-GCGCa -3' miRNA: 3'- -AGU--UGGCGuUGUCGUUcuCGGuCGCG- -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 11258 | 0.67 | 0.71996 |
Target: 5'- -gAGCUGCGggaaGCAGCgAAGAaaaauggcGCCAGCGa -3' miRNA: 3'- agUUGGCGU----UGUCG-UUCU--------CGGUCGCg -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 31443 | 0.67 | 0.71996 |
Target: 5'- aUCGACCuuGGCucagAGguGGAgaaggugcuGCCAGCGCa -3' miRNA: 3'- -AGUUGGcgUUG----UCguUCU---------CGGUCGCG- -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 3571 | 0.67 | 0.708965 |
Target: 5'- gUUAACCGaCAAcCAGCcccacuGGcGGCCaAGCGCa -3' miRNA: 3'- -AGUUGGC-GUU-GUCGu-----UC-UCGG-UCGCG- -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 2365 | 0.67 | 0.708965 |
Target: 5'- aUAGCgCGCu-CGGUAuccGCCAGCGCa -3' miRNA: 3'- aGUUG-GCGuuGUCGUucuCGGUCGCG- -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 6587 | 0.67 | 0.708965 |
Target: 5'- --cGCCGC-GCAGC-GGAGCaucgAGCGUg -3' miRNA: 3'- aguUGGCGuUGUCGuUCUCGg---UCGCG- -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 36435 | 0.67 | 0.708965 |
Target: 5'- uUCGAUgaaGCAACA-CAGGGGCUAcGUGCa -3' miRNA: 3'- -AGUUGg--CGUUGUcGUUCUCGGU-CGCG- -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 10864 | 0.67 | 0.694555 |
Target: 5'- aCAGCCGCAucgGCGGCcuaaAAGguuuugacccuuuuGGCCAGCu- -3' miRNA: 3'- aGUUGGCGU---UGUCG----UUC--------------UCGGUCGcg -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 30178 | 0.67 | 0.68675 |
Target: 5'- gCGACCagauaGC-GCGGCAAGGgcgaacGCCAGCGg -3' miRNA: 3'- aGUUGG-----CGuUGUCGUUCU------CGGUCGCg -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 35610 | 0.67 | 0.68675 |
Target: 5'- -aAGCCGCcGCGcuCGAGGcGUCGGCGCg -3' miRNA: 3'- agUUGGCGuUGUc-GUUCU-CGGUCGCG- -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 20969 | 0.67 | 0.671063 |
Target: 5'- gUCAGCCaGCAGgacaacaccaucagUAGCAucgGGAGCCGgaccacuGCGCu -3' miRNA: 3'- -AGUUGG-CGUU--------------GUCGU---UCUCGGU-------CGCG- -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 23392 | 0.67 | 0.660935 |
Target: 5'- aCAGCCcgAACAGCAcgaaaaggucgguaAGcAGCCAGgGCa -3' miRNA: 3'- aGUUGGcgUUGUCGU--------------UC-UCGGUCgCG- -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 19766 | 0.67 | 0.660935 |
Target: 5'- aCAGCCcgAACAGCAcgaaaaggucgguaAGcAGCCAGgGCa -3' miRNA: 3'- aGUUGGcgUUGUCGU--------------UC-UCGGUCgCG- -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 49973 | 0.68 | 0.641751 |
Target: 5'- cCAGCCGaAACGGCAcAGcGCCAucaGCGUa -3' miRNA: 3'- aGUUGGCgUUGUCGU-UCuCGGU---CGCG- -5' |
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27388 | 3' | -53.7 | NC_005857.1 | + | 13344 | 0.69 | 0.563031 |
Target: 5'- cCAguACCGCAGCGGCGAuGGCU-GCGa -3' miRNA: 3'- aGU--UGGCGUUGUCGUUcUCGGuCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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