Results 21 - 24 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27407 | 5' | -54.1 | NC_005869.1 | + | 17461 | 0.66 | 0.597781 |
Target: 5'- -cGGCU------GGACCGCCgCgGGGCu -3' miRNA: 3'- aaCCGAuuuuagUCUGGUGG-GgCCCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 2059 | 0.66 | 0.597781 |
Target: 5'- cUGGUUuAGAUCGccGCCGgCCCGGGg -3' miRNA: 3'- aACCGAuUUUAGUc-UGGUgGGGCCCg -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 3164 | 0.66 | 0.621022 |
Target: 5'- -cGGCagaUGAAAgugaCAGACgCGCUgCGGGCc -3' miRNA: 3'- aaCCG---AUUUUa---GUCUG-GUGGgGCCCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 11437 | 0.65 | 0.6315 |
Target: 5'- -cGGCUGGAgcgcgugGUCAG--CACCUCGcGGCg -3' miRNA: 3'- aaCCGAUUU-------UAGUCugGUGGGGC-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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