miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27409 3' -64.9 NC_005869.1 + 2053 0.67 0.175647
Target:  5'- cCGGAUCUgGuuuagaUCGCCGCCGg-CCCGGg -3'
miRNA:   3'- -GUCUGGGgC------AGCGGCGGCagGGGCCg -5'
27409 3' -64.9 NC_005869.1 + 6045 0.74 0.05311
Target:  5'- gCAGGCCUCGUCaCCGgaguccgCGUCUCCGGCg -3'
miRNA:   3'- -GUCUGGGGCAGcGGCg------GCAGGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 8323 0.69 0.121198
Target:  5'- gAGGCCC--UCGCCGgaggUGUCCUCGGCg -3'
miRNA:   3'- gUCUGGGgcAGCGGCg---GCAGGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 8500 0.66 0.205061
Target:  5'- gAGcCCCCGcgUGCCGgccuCCGcggCCUCGGCg -3'
miRNA:   3'- gUCuGGGGCa-GCGGC----GGCa--GGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 8828 0.68 0.150047
Target:  5'- cCAGGuCCCCGUgGCCGgCGcgcUCCaCGGUg -3'
miRNA:   3'- -GUCU-GGGGCAgCGGCgGC---AGGgGCCG- -5'
27409 3' -64.9 NC_005869.1 + 13098 0.72 0.07835
Target:  5'- -cGGCCCUcUCGCgCGucCCGUCCCgGGCa -3'
miRNA:   3'- guCUGGGGcAGCG-GC--GGCAGGGgCCG- -5'
27409 3' -64.9 NC_005869.1 + 13307 0.67 0.175647
Target:  5'- cCAGGCgCCGcCGCCgGCCGccgCCgCCGcGCc -3'
miRNA:   3'- -GUCUGgGGCaGCGG-CGGCa--GG-GGC-CG- -5'
27409 3' -64.9 NC_005869.1 + 13431 0.66 0.21036
Target:  5'- cCAGcuucUCCCGcCGCCaccaGCCGcgCCCCGGg -3'
miRNA:   3'- -GUCu---GGGGCaGCGG----CGGCa-GGGGCCg -5'
27409 3' -64.9 NC_005869.1 + 14955 0.7 0.100271
Target:  5'- aCGGACCaCGgcacgCGCCGCUGcguaacagcaUCCCCGGg -3'
miRNA:   3'- -GUCUGGgGCa----GCGGCGGC----------AGGGGCCg -5'
27409 3' -64.9 NC_005869.1 + 15218 0.73 0.066367
Target:  5'- gGGGCgCC--CGCCGCCuGUCCCCGGa -3'
miRNA:   3'- gUCUGgGGcaGCGGCGG-CAGGGGCCg -5'
27409 3' -64.9 NC_005869.1 + 15330 0.67 0.189854
Target:  5'- -uGACCCUGUgGCCGaCGuggucaacgcgaUCgCCGGCg -3'
miRNA:   3'- guCUGGGGCAgCGGCgGC------------AGgGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 15472 0.67 0.175647
Target:  5'- gCGGuAgCCCGgCGCCGCCG-CgCgCGGCg -3'
miRNA:   3'- -GUC-UgGGGCaGCGGCGGCaG-GgGCCG- -5'
27409 3' -64.9 NC_005869.1 + 16037 0.67 0.189854
Target:  5'- cCGGugCCagccUCGCCuaCGUCCCgGGUc -3'
miRNA:   3'- -GUCugGGgc--AGCGGcgGCAGGGgCCG- -5'
27409 3' -64.9 NC_005869.1 + 16195 0.69 0.127886
Target:  5'- --cGCCCC-UCGCCGacccccgCGUCCCgCGGCc -3'
miRNA:   3'- gucUGGGGcAGCGGCg------GCAGGG-GCCG- -5'
27409 3' -64.9 NC_005869.1 + 16613 0.67 0.189854
Target:  5'- -uGGCUCCG-CGCCgggcggGCCGgCCCCaGGCc -3'
miRNA:   3'- guCUGGGGCaGCGG------CGGCaGGGG-CCG- -5'
27409 3' -64.9 NC_005869.1 + 16827 0.67 0.185009
Target:  5'- aCAGACCCCa---CUGCCGcCCgUGGCg -3'
miRNA:   3'- -GUCUGGGGcagcGGCGGCaGGgGCCG- -5'
27409 3' -64.9 NC_005869.1 + 16974 0.67 0.188389
Target:  5'- gAGcCCCCG-CGCCgcgugccccgcaggGCCGUgcgggacaUCCCGGCc -3'
miRNA:   3'- gUCuGGGGCaGCGG--------------CGGCA--------GGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 17486 0.66 0.205061
Target:  5'- cCAG-CCCCG-CGCgCGCCGcgugcgCCUCGcGCc -3'
miRNA:   3'- -GUCuGGGGCaGCG-GCGGCa-----GGGGC-CG- -5'
27409 3' -64.9 NC_005869.1 + 17520 0.81 0.012893
Target:  5'- cCAGagcGCCUcggCGUCGCCGCCGUaCCCCGGUg -3'
miRNA:   3'- -GUC---UGGG---GCAGCGGCGGCA-GGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 18085 0.7 0.105875
Target:  5'- cCAGcACCUCGUCGCUGUCGcucaaCCCCcGCu -3'
miRNA:   3'- -GUC-UGGGGCAGCGGCGGCa----GGGGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.