Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27409 | 3' | -64.9 | NC_005869.1 | + | 18804 | 0.67 | 0.189854 |
Target: 5'- -cGGCUCCG--GCCGCgG-CUCCGGCg -3' miRNA: 3'- guCUGGGGCagCGGCGgCaGGGGCCG- -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 2053 | 0.67 | 0.175647 |
Target: 5'- cCGGAUCUgGuuuagaUCGCCGCCGg-CCCGGg -3' miRNA: 3'- -GUCUGGGgC------AGCGGCGGCagGGGCCg -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 13307 | 0.67 | 0.175647 |
Target: 5'- cCAGGCgCCGcCGCCgGCCGccgCCgCCGcGCc -3' miRNA: 3'- -GUCUGgGGCaGCGG-CGGCa--GG-GGC-CG- -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 24613 | 0.67 | 0.175647 |
Target: 5'- aAGAuCCCCGUCaGCUGCCGcgccaaccgCCCaCGaGCc -3' miRNA: 3'- gUCU-GGGGCAG-CGGCGGCa--------GGG-GC-CG- -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 16827 | 0.67 | 0.185009 |
Target: 5'- aCAGACCCCa---CUGCCGcCCgUGGCg -3' miRNA: 3'- -GUCUGGGGcagcGGCGGCaGGgGCCG- -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 16974 | 0.67 | 0.188389 |
Target: 5'- gAGcCCCCG-CGCCgcgugccccgcaggGCCGUgcgggacaUCCCGGCc -3' miRNA: 3'- gUCuGGGGCaGCGG--------------CGGCA--------GGGGCCG- -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 15330 | 0.67 | 0.189854 |
Target: 5'- -uGACCCUGUgGCCGaCGuggucaacgcgaUCgCCGGCg -3' miRNA: 3'- guCUGGGGCAgCGGCgGC------------AGgGGCCG- -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 16613 | 0.67 | 0.189854 |
Target: 5'- -uGGCUCCG-CGCCgggcggGCCGgCCCCaGGCc -3' miRNA: 3'- guCUGGGGCaGCGG------CGGCaGGGG-CCG- -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 16037 | 0.67 | 0.189854 |
Target: 5'- cCGGugCCagccUCGCCuaCGUCCCgGGUc -3' miRNA: 3'- -GUCugGGgc--AGCGGcgGCAGGGgCCG- -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 15472 | 0.67 | 0.175647 |
Target: 5'- gCGGuAgCCCGgCGCCGCCG-CgCgCGGCg -3' miRNA: 3'- -GUC-UgGGGCaGCGGCGGCaG-GgGCCG- -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 8828 | 0.68 | 0.150047 |
Target: 5'- cCAGGuCCCCGUgGCCGgCGcgcUCCaCGGUg -3' miRNA: 3'- -GUCU-GGGGCAgCGGCgGC---AGGgGCCG- -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 24372 | 0.68 | 0.148861 |
Target: 5'- cCAGAguaccaUCCUG-CGCCagguccugcaggagGCCGcCCCCGGCg -3' miRNA: 3'- -GUCU------GGGGCaGCGG--------------CGGCaGGGGCCG- -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 6045 | 0.74 | 0.05311 |
Target: 5'- gCAGGCCUCGUCaCCGgaguccgCGUCUCCGGCg -3' miRNA: 3'- -GUCUGGGGCAGcGGCg------GCAGGGGCCG- -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 15218 | 0.73 | 0.066367 |
Target: 5'- gGGGCgCC--CGCCGCCuGUCCCCGGa -3' miRNA: 3'- gUCUGgGGcaGCGGCGG-CAGGGGCCg -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 13098 | 0.72 | 0.07835 |
Target: 5'- -cGGCCCUcUCGCgCGucCCGUCCCgGGCa -3' miRNA: 3'- guCUGGGGcAGCG-GC--GGCAGGGgCCG- -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 14955 | 0.7 | 0.100271 |
Target: 5'- aCGGACCaCGgcacgCGCCGCUGcguaacagcaUCCCCGGg -3' miRNA: 3'- -GUCUGGgGCa----GCGGCGGC----------AGGGGCCg -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 18748 | 0.7 | 0.111773 |
Target: 5'- --uGCCgCCGcCGCCcCCG-CCCCGGCc -3' miRNA: 3'- gucUGG-GGCaGCGGcGGCaGGGGCCG- -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 16195 | 0.69 | 0.127886 |
Target: 5'- --cGCCCC-UCGCCGacccccgCGUCCCgCGGCc -3' miRNA: 3'- gucUGGGGcAGCGGCg------GCAGGG-GCCG- -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 24906 | 0.69 | 0.134555 |
Target: 5'- gCAGACCCUGcuggugCGCCGCgCGagcccacUCCCCGa- -3' miRNA: 3'- -GUCUGGGGCa-----GCGGCG-GC-------AGGGGCcg -5' |
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27409 | 3' | -64.9 | NC_005869.1 | + | 23791 | 0.68 | 0.142297 |
Target: 5'- gCGGGCCgcgCCGUCGCCgcuGCCGUCUCUucaGCc -3' miRNA: 3'- -GUCUGG---GGCAGCGG---CGGCAGGGGc--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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