miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27409 3' -64.9 NC_005869.1 + 23724 0.66 0.221311
Target:  5'- uGGACCCg--CGCCuCCGUCUCCgccgucGGCa -3'
miRNA:   3'- gUCUGGGgcaGCGGcGGCAGGGG------CCG- -5'
27409 3' -64.9 NC_005869.1 + 18085 0.7 0.105875
Target:  5'- cCAGcACCUCGUCGCUGUCGcucaaCCCCcGCu -3'
miRNA:   3'- -GUC-UGGGGCAGCGGCGGCa----GGGGcCG- -5'
27409 3' -64.9 NC_005869.1 + 19418 0.69 0.127886
Target:  5'- gCGGugCCCGUgGCCGg-GUCCCCGu- -3'
miRNA:   3'- -GUCugGGGCAgCGGCggCAGGGGCcg -5'
27409 3' -64.9 NC_005869.1 + 27157 0.69 0.131357
Target:  5'- -cGGCCCCaggCGCCGCa--CCUCGGCc -3'
miRNA:   3'- guCUGGGGca-GCGGCGgcaGGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 18454 0.67 0.162393
Target:  5'- gAGcGCCUgCGcCGCCGCCGggugcuccgCCuCCGGCg -3'
miRNA:   3'- gUC-UGGG-GCaGCGGCGGCa--------GG-GGCCG- -5'
27409 3' -64.9 NC_005869.1 + 29428 0.66 0.194809
Target:  5'- ----gCCCG-CGCCGCCG-CCCgCGGa -3'
miRNA:   3'- gucugGGGCaGCGGCGGCaGGG-GCCg -5'
27409 3' -64.9 NC_005869.1 + 30475 1.1 0.000066
Target:  5'- aCAGACCCCGUCGCCGCCGUCCCCGGCu -3'
miRNA:   3'- -GUCUGGGGCAGCGGCGGCAGGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 24652 0.76 0.034846
Target:  5'- cCGGcuGCCCuugCGcCGgCGCCGUCCCCGGCc -3'
miRNA:   3'- -GUC--UGGG---GCaGCgGCGGCAGGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 22434 0.72 0.07835
Target:  5'- --cACCUCacgCGCCGCgGUCCCCGGg -3'
miRNA:   3'- gucUGGGGca-GCGGCGgCAGGGGCCg -5'
27409 3' -64.9 NC_005869.1 + 8323 0.69 0.121198
Target:  5'- gAGGCCC--UCGCCGgaggUGUCCUCGGCg -3'
miRNA:   3'- gUCUGGGgcAGCGGCg---GCAGGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 26351 0.68 0.150047
Target:  5'- cCAGACCUCGccgagcuggCGCaggaGCgGggCCCCGGCc -3'
miRNA:   3'- -GUCUGGGGCa--------GCGg---CGgCa-GGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 24959 0.66 0.214139
Target:  5'- -uGACCCUG-CGCCGCUGggucauaaacuucuUCCUCuGCg -3'
miRNA:   3'- guCUGGGGCaGCGGCGGC--------------AGGGGcCG- -5'
27409 3' -64.9 NC_005869.1 + 21296 0.73 0.061058
Target:  5'- aGGGCgCCCGUgGCCGUCG-CCCCGuccuGCa -3'
miRNA:   3'- gUCUG-GGGCAgCGGCGGCaGGGGC----CG- -5'
27409 3' -64.9 NC_005869.1 + 20592 0.66 0.199878
Target:  5'- aGGGCCCCGgggCGCgGCUGguggCGGCg -3'
miRNA:   3'- gUCUGGGGCa--GCGgCGGCagggGCCG- -5'
27409 3' -64.9 NC_005869.1 + 28270 0.69 0.121198
Target:  5'- gCGGcACCCCcaUCGCCGaCCGgCCCCuGCg -3'
miRNA:   3'- -GUC-UGGGGc-AGCGGC-GGCaGGGGcCG- -5'
27409 3' -64.9 NC_005869.1 + 22316 0.75 0.046171
Target:  5'- ---cCCCCGcCGCCGCCG-CCCCaGCu -3'
miRNA:   3'- gucuGGGGCaGCGGCGGCaGGGGcCG- -5'
27409 3' -64.9 NC_005869.1 + 21055 0.66 0.199878
Target:  5'- gCGGcccuCCUCGUCGCUGUcaaaggCGUCCCagGGCc -3'
miRNA:   3'- -GUCu---GGGGCAGCGGCG------GCAGGGg-CCG- -5'
27409 3' -64.9 NC_005869.1 + 25514 0.71 0.082558
Target:  5'- gAGACCggCCGcCGCCGCCGaggCCgcggaggCCGGCa -3'
miRNA:   3'- gUCUGG--GGCaGCGGCGGCa--GG-------GGCCG- -5'
27409 3' -64.9 NC_005869.1 + 24613 0.67 0.175647
Target:  5'- aAGAuCCCCGUCaGCUGCCGcgccaaccgCCCaCGaGCc -3'
miRNA:   3'- gUCU-GGGGCAG-CGGCGGCa--------GGG-GC-CG- -5'
27409 3' -64.9 NC_005869.1 + 13307 0.67 0.175647
Target:  5'- cCAGGCgCCGcCGCCgGCCGccgCCgCCGcGCc -3'
miRNA:   3'- -GUCUGgGGCaGCGG-CGGCa--GG-GGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.