Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 29286 | 1.12 | 0.000163 |
Target: 5'- cUGCGAGGGCAACUACCGCAGCGGUCCg -3' miRNA: 3'- -ACGCUCCCGUUGAUGGCGUCGCCAGG- -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 15296 | 0.8 | 0.043042 |
Target: 5'- gGCGGGGGCGGCgGCgGCAGCGGa-- -3' miRNA: 3'- aCGCUCCCGUUGaUGgCGUCGCCagg -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 14570 | 0.79 | 0.051439 |
Target: 5'- gGCGGGGGaCAccuucaccuACUACCGCAGCuGGUaCCu -3' miRNA: 3'- aCGCUCCC-GU---------UGAUGGCGUCG-CCA-GG- -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 8622 | 0.76 | 0.08235 |
Target: 5'- gGCGuGGGCGAUga-CGCGGCGGUUg -3' miRNA: 3'- aCGCuCCCGUUGaugGCGUCGCCAGg -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 19071 | 0.75 | 0.113178 |
Target: 5'- cGCagGAuGGCGACgccgucgaugaUGCCGCAGUGGUCCu -3' miRNA: 3'- aCG--CUcCCGUUG-----------AUGGCGUCGCCAGG- -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 1645 | 0.75 | 0.103835 |
Target: 5'- cGgGAGGGCuaugucuUUACCGUgGGCGGUCCu -3' miRNA: 3'- aCgCUCCCGuu-----GAUGGCG-UCGCCAGG- -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 17554 | 0.75 | 0.103835 |
Target: 5'- gGCGGuGGCAGC-GCCGCccgcccgcagcGGCGGUCCc -3' miRNA: 3'- aCGCUcCCGUUGaUGGCG-----------UCGCCAGG- -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 10638 | 0.75 | 0.100885 |
Target: 5'- cUGCGGGugcgugaucuGGCAGC-ACCGCAGCGGcUCg -3' miRNA: 3'- -ACGCUC----------CCGUUGaUGGCGUCGCC-AGg -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 15649 | 0.74 | 0.119496 |
Target: 5'- gGCgGAGGagcugcugcugccGCAGCUGCUGCuguugcaccGGCGGUCCa -3' miRNA: 3'- aCG-CUCC-------------CGUUGAUGGCG---------UCGCCAGG- -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 21942 | 0.74 | 0.130514 |
Target: 5'- cGCGcuGGGCGaucACUGCCGCacguccugggacAGCcGGUCCa -3' miRNA: 3'- aCGCu-CCCGU---UGAUGGCG------------UCG-CCAGG- -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 24554 | 0.73 | 0.154106 |
Target: 5'- cGCGGGGGCGccuucgaGCUGCgGCcccgggagGGCGG-CCg -3' miRNA: 3'- aCGCUCCCGU-------UGAUGgCG--------UCGCCaGG- -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 20725 | 0.73 | 0.154537 |
Target: 5'- cGCGGcGGCGGCgGCCgGCGGCGGcgCCu -3' miRNA: 3'- aCGCUcCCGUUGaUGG-CGUCGCCa-GG- -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 6735 | 0.72 | 0.172236 |
Target: 5'- gGUGAGGGCGcuggcauACaUGCCGCAGauGUCa -3' miRNA: 3'- aCGCUCCCGU-------UG-AUGGCGUCgcCAGg -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 6638 | 0.7 | 0.23279 |
Target: 5'- aGCuGAGGG--GCUcgggGCCGUcgaGGCGGUCCu -3' miRNA: 3'- aCG-CUCCCguUGA----UGGCG---UCGCCAGG- -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 20292 | 0.7 | 0.251322 |
Target: 5'- gGUG-GGGCccAGgUACCGCGGCGGcacauaaagaggcUCCg -3' miRNA: 3'- aCGCuCCCG--UUgAUGGCGUCGCC-------------AGG- -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 17077 | 0.69 | 0.272458 |
Target: 5'- cGCGGGGGCucgGCacggGCgGUGGUGGcCCg -3' miRNA: 3'- aCGCUCCCGu--UGa---UGgCGUCGCCaGG- -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 18409 | 0.69 | 0.279574 |
Target: 5'- uUGCGGaGGCGGCgGCUGCGGCGcaCCc -3' miRNA: 3'- -ACGCUcCCGUUGaUGGCGUCGCcaGG- -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 21147 | 0.69 | 0.279574 |
Target: 5'- -cCGAGGGCAGCca--GCGGgGGUUCa -3' miRNA: 3'- acGCUCCCGUUGauggCGUCgCCAGG- -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 28445 | 0.69 | 0.272458 |
Target: 5'- gUGCGAGacccaguGCGagcGCUGCCGCAGCGacgCCc -3' miRNA: 3'- -ACGCUCc------CGU---UGAUGGCGUCGCca-GG- -5' |
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27411 | 3' | -58.1 | NC_005869.1 | + | 23382 | 0.69 | 0.286838 |
Target: 5'- gGCGAGGGCG---ACCGagAGCGcGUCg -3' miRNA: 3'- aCGCUCCCGUugaUGGCg-UCGC-CAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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