miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27411 3' -58.1 NC_005869.1 + 210 0.66 0.404069
Target:  5'- cGCG-GGGCGGg-GCCgaGCGGCGGaaauUCCc -3'
miRNA:   3'- aCGCuCCCGUUgaUGG--CGUCGCC----AGG- -5'
27411 3' -58.1 NC_005869.1 + 370 0.66 0.404069
Target:  5'- aGCG-GGGUGuccuucgcGCUGagagguCCGCGGCGG-CCg -3'
miRNA:   3'- aCGCuCCCGU--------UGAU------GGCGUCGCCaGG- -5'
27411 3' -58.1 NC_005869.1 + 1645 0.75 0.103835
Target:  5'- cGgGAGGGCuaugucuUUACCGUgGGCGGUCCu -3'
miRNA:   3'- aCgCUCCCGuu-----GAUGGCG-UCGCCAGG- -5'
27411 3' -58.1 NC_005869.1 + 3040 0.67 0.385572
Target:  5'- aGCGGGaGGUgguGCUGCacaaGCGGCGGg-- -3'
miRNA:   3'- aCGCUC-CCGu--UGAUGg---CGUCGCCagg -5'
27411 3' -58.1 NC_005869.1 + 5120 0.68 0.325381
Target:  5'- gGCGuAGGGCAugUcCUGCAG-GG-CCu -3'
miRNA:   3'- aCGC-UCCCGUugAuGGCGUCgCCaGG- -5'
27411 3' -58.1 NC_005869.1 + 5574 0.67 0.350295
Target:  5'- aGCuGuGGGCGucGCUGCgGCAGCGcUCg -3'
miRNA:   3'- aCG-CuCCCGU--UGAUGgCGUCGCcAGg -5'
27411 3' -58.1 NC_005869.1 + 5845 0.66 0.442695
Target:  5'- gGCGAGgacgaagcuGGCGAcCUGCgagggGUAGCGGUCg -3'
miRNA:   3'- aCGCUC---------CCGUU-GAUGg----CGUCGCCAGg -5'
27411 3' -58.1 NC_005869.1 + 6372 0.67 0.376535
Target:  5'- gGCGAugaacuggucgGGGUAGgUcCCG-GGCGGUCCg -3'
miRNA:   3'- aCGCU-----------CCCGUUgAuGGCgUCGCCAGG- -5'
27411 3' -58.1 NC_005869.1 + 6638 0.7 0.23279
Target:  5'- aGCuGAGGG--GCUcgggGCCGUcgaGGCGGUCCu -3'
miRNA:   3'- aCG-CUCCCguUGA----UGGCG---UCGCCAGG- -5'
27411 3' -58.1 NC_005869.1 + 6735 0.72 0.172236
Target:  5'- gGUGAGGGCGcuggcauACaUGCCGCAGauGUCa -3'
miRNA:   3'- aCGCUCCCGU-------UG-AUGGCGUCgcCAGg -5'
27411 3' -58.1 NC_005869.1 + 7171 0.67 0.358895
Target:  5'- -uUGAGGGCGuccugGCCGCcGCGGcUCUg -3'
miRNA:   3'- acGCUCCCGUuga--UGGCGuCGCC-AGG- -5'
27411 3' -58.1 NC_005869.1 + 7246 0.66 0.432842
Target:  5'- cUGaCGuGGGCugguucuGCUGCCGCcgcugcuGCGG-CCu -3'
miRNA:   3'- -AC-GCuCCCGu------UGAUGGCGu------CGCCaGG- -5'
27411 3' -58.1 NC_005869.1 + 7612 0.67 0.341842
Target:  5'- cGCGcaGGcGGCGGC-GCCGCAGCuGGgcauaggCCa -3'
miRNA:   3'- aCGC--UC-CCGUUGaUGGCGUCG-CCa------GG- -5'
27411 3' -58.1 NC_005869.1 + 8223 0.67 0.367643
Target:  5'- gGCG-GGGCGGCggGCCcucggGCGgGgGGUCCc -3'
miRNA:   3'- aCGCuCCCGUUGa-UGG-----CGU-CgCCAGG- -5'
27411 3' -58.1 NC_005869.1 + 8317 0.66 0.442695
Target:  5'- gGCGcGGGcCAGCUccACCGCGGUcugggGGguagCCu -3'
miRNA:   3'- aCGCuCCC-GUUGA--UGGCGUCG-----CCa---GG- -5'
27411 3' -58.1 NC_005869.1 + 8622 0.76 0.08235
Target:  5'- gGCGuGGGCGAUga-CGCGGCGGUUg -3'
miRNA:   3'- aCGCuCCCGUUGaugGCGUCGCCAGg -5'
27411 3' -58.1 NC_005869.1 + 9567 0.66 0.442695
Target:  5'- gGCGGGGGagaaGAggGCCGCuuccaGGCGGcggcugagcUCCg -3'
miRNA:   3'- aCGCUCCCg---UUgaUGGCG-----UCGCC---------AGG- -5'
27411 3' -58.1 NC_005869.1 + 10138 0.67 0.358895
Target:  5'- cGCGGGGGag---GCCGCAagcgcGCGG-CCu -3'
miRNA:   3'- aCGCUCCCguugaUGGCGU-----CGCCaGG- -5'
27411 3' -58.1 NC_005869.1 + 10638 0.75 0.100885
Target:  5'- cUGCGGGugcgugaucuGGCAGC-ACCGCAGCGGcUCg -3'
miRNA:   3'- -ACGCUC----------CCGUUGaUGGCGUCGCC-AGg -5'
27411 3' -58.1 NC_005869.1 + 10706 0.67 0.37564
Target:  5'- gGgGAGGGCcuggcgcGGCUgucgGgCGCGGCGGcCCc -3'
miRNA:   3'- aCgCUCCCG-------UUGA----UgGCGUCGCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.