miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27411 3' -58.1 NC_005869.1 + 11406 0.66 0.39475
Target:  5'- gGcCGAcaaccuGGGCAugUACCGCaacaAGCGG-CUg -3'
miRNA:   3'- aC-GCU------CCCGUugAUGGCG----UCGCCaGG- -5'
27411 3' -58.1 NC_005869.1 + 11724 0.67 0.350295
Target:  5'- aGCuGGGGCGGCgGCgGCGGgGGUg- -3'
miRNA:   3'- aCGcUCCCGUUGaUGgCGUCgCCAgg -5'
27411 3' -58.1 NC_005869.1 + 11762 0.66 0.432842
Target:  5'- gGCGAGgaagaggaGGCAGaagaguCCGCAggcggcgcuguGCGGUCCc -3'
miRNA:   3'- aCGCUC--------CCGUUgau---GGCGU-----------CGCCAGG- -5'
27411 3' -58.1 NC_005869.1 + 11961 0.66 0.423118
Target:  5'- cGCGAGgcgggcucccGGCGACggccaGCCaGUGGCGGccUCCg -3'
miRNA:   3'- aCGCUC----------CCGUUGa----UGG-CGUCGCC--AGG- -5'
27411 3' -58.1 NC_005869.1 + 12646 0.66 0.39475
Target:  5'- gGC-AGcGGCGGCUGCCGgCGGCGuaugCCc -3'
miRNA:   3'- aCGcUC-CCGUUGAUGGC-GUCGCca--GG- -5'
27411 3' -58.1 NC_005869.1 + 12997 0.67 0.358895
Target:  5'- --gGAGGGCcGCcucaUGCuGCGGUCCg -3'
miRNA:   3'- acgCUCCCGuUGaug-GCGuCGCCAGG- -5'
27411 3' -58.1 NC_005869.1 + 14125 0.67 0.358895
Target:  5'- -cCGAGGGCAACUucuCgGaCAucGCGGUCa -3'
miRNA:   3'- acGCUCCCGUUGAu--GgC-GU--CGCCAGg -5'
27411 3' -58.1 NC_005869.1 + 14570 0.79 0.051439
Target:  5'- gGCGGGGGaCAccuucaccuACUACCGCAGCuGGUaCCu -3'
miRNA:   3'- aCGCUCCC-GU---------UGAUGGCGUCG-CCA-GG- -5'
27411 3' -58.1 NC_005869.1 + 15296 0.8 0.043042
Target:  5'- gGCGGGGGCGGCgGCgGCAGCGGa-- -3'
miRNA:   3'- aCGCUCCCGUUGaUGgCGUCGCCagg -5'
27411 3' -58.1 NC_005869.1 + 15649 0.74 0.119496
Target:  5'- gGCgGAGGagcugcugcugccGCAGCUGCUGCuguugcaccGGCGGUCCa -3'
miRNA:   3'- aCG-CUCC-------------CGUUGAUGGCG---------UCGCCAGG- -5'
27411 3' -58.1 NC_005869.1 + 16460 0.69 0.294249
Target:  5'- aGcCGAGGGCGggggACcGCCGCuGCGGg-- -3'
miRNA:   3'- aC-GCUCCCGU----UGaUGGCGuCGCCagg -5'
27411 3' -58.1 NC_005869.1 + 17077 0.69 0.272458
Target:  5'- cGCGGGGGCucgGCacggGCgGUGGUGGcCCg -3'
miRNA:   3'- aCGCUCCCGu--UGa---UGgCGUCGCCaGG- -5'
27411 3' -58.1 NC_005869.1 + 17386 0.66 0.423118
Target:  5'- gGC-AGGuGCGGCUgACgGCGGUGGUgCCc -3'
miRNA:   3'- aCGcUCC-CGUUGA-UGgCGUCGCCA-GG- -5'
27411 3' -58.1 NC_005869.1 + 17473 0.66 0.432842
Target:  5'- cGCGgggcuaGGGGCGGCgugggUGCUGgAGCGGgcggcUCCa -3'
miRNA:   3'- aCGC------UCCCGUUG-----AUGGCgUCGCC-----AGG- -5'
27411 3' -58.1 NC_005869.1 + 17554 0.75 0.103835
Target:  5'- gGCGGuGGCAGC-GCCGCccgcccgcagcGGCGGUCCc -3'
miRNA:   3'- aCGCUcCCGUUGaUGGCG-----------UCGCCAGG- -5'
27411 3' -58.1 NC_005869.1 + 17833 0.66 0.432842
Target:  5'- gGCGccucGGcGCAGCggcgGCagGCGGCGGUaCCg -3'
miRNA:   3'- aCGCu---CC-CGUUGa---UGg-CGUCGCCA-GG- -5'
27411 3' -58.1 NC_005869.1 + 18409 0.69 0.279574
Target:  5'- uUGCGGaGGCGGCgGCUGCGGCGcaCCc -3'
miRNA:   3'- -ACGCUcCCGUUGaUGGCGUCGCcaGG- -5'
27411 3' -58.1 NC_005869.1 + 19071 0.75 0.113178
Target:  5'- cGCagGAuGGCGACgccgucgaugaUGCCGCAGUGGUCCu -3'
miRNA:   3'- aCG--CUcCCGUUG-----------AUGGCGUCGCCAGG- -5'
27411 3' -58.1 NC_005869.1 + 20292 0.7 0.251322
Target:  5'- gGUG-GGGCccAGgUACCGCGGCGGcacauaaagaggcUCCg -3'
miRNA:   3'- aCGCuCCCG--UUgAUGGCGUCGCC-------------AGG- -5'
27411 3' -58.1 NC_005869.1 + 20365 0.67 0.367643
Target:  5'- gGCGGaGGCGACgcuccCUGCGGCGGcgCUg -3'
miRNA:   3'- aCGCUcCCGUUGau---GGCGUCGCCa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.