miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27411 3' -58.1 NC_005869.1 + 20750 0.68 0.309517
Target:  5'- cUGcCGGGGGCGACcuacACCuacgAGUGGUCCu -3'
miRNA:   3'- -AC-GCUCCCGUUGa---UGGcg--UCGCCAGG- -5'
27411 3' -58.1 NC_005869.1 + 5120 0.68 0.325381
Target:  5'- gGCGuAGGGCAugUcCUGCAG-GG-CCu -3'
miRNA:   3'- aCGC-UCCCGUugAuGGCGUCgCCaGG- -5'
27411 3' -58.1 NC_005869.1 + 7612 0.67 0.341842
Target:  5'- cGCGcaGGcGGCGGC-GCCGCAGCuGGgcauaggCCa -3'
miRNA:   3'- aCGC--UC-CCGUUGaUGGCGUCG-CCa------GG- -5'
27411 3' -58.1 NC_005869.1 + 5574 0.67 0.350295
Target:  5'- aGCuGuGGGCGucGCUGCgGCAGCGcUCg -3'
miRNA:   3'- aCG-CuCCCGU--UGAUGgCGUCGCcAGg -5'
27411 3' -58.1 NC_005869.1 + 11724 0.67 0.350295
Target:  5'- aGCuGGGGCGGCgGCgGCGGgGGUg- -3'
miRNA:   3'- aCGcUCCCGUUGaUGgCGUCgCCAgg -5'
27411 3' -58.1 NC_005869.1 + 31086 0.67 0.367643
Target:  5'- aGCGgcuGGGGCugaAGCUGCCcaGGCGG-CCg -3'
miRNA:   3'- aCGC---UCCCG---UUGAUGGcgUCGCCaGG- -5'
27411 3' -58.1 NC_005869.1 + 7171 0.67 0.358895
Target:  5'- -uUGAGGGCGuccugGCCGCcGCGGcUCUg -3'
miRNA:   3'- acGCUCCCGUuga--UGGCGuCGCC-AGG- -5'
27411 3' -58.1 NC_005869.1 + 10138 0.67 0.358895
Target:  5'- cGCGGGGGag---GCCGCAagcgcGCGG-CCu -3'
miRNA:   3'- aCGCUCCCguugaUGGCGU-----CGCCaGG- -5'
27411 3' -58.1 NC_005869.1 + 16460 0.69 0.294249
Target:  5'- aGcCGAGGGCGggggACcGCCGCuGCGGg-- -3'
miRNA:   3'- aC-GCUCCCGU----UGaUGGCGuCGCCagg -5'
27411 3' -58.1 NC_005869.1 + 23382 0.69 0.286838
Target:  5'- gGCGAGGGCG---ACCGagAGCGcGUCg -3'
miRNA:   3'- aCGCUCCCGUugaUGGCg-UCGC-CAGg -5'
27411 3' -58.1 NC_005869.1 + 21147 0.69 0.279574
Target:  5'- -cCGAGGGCAGCca--GCGGgGGUUCa -3'
miRNA:   3'- acGCUCCCGUUGauggCGUCgCCAGG- -5'
27411 3' -58.1 NC_005869.1 + 20365 0.67 0.367643
Target:  5'- gGCGGaGGCGACgcuccCUGCGGCGGcgCUg -3'
miRNA:   3'- aCGCUcCCGUUGau---GGCGUCGCCa-GG- -5'
27411 3' -58.1 NC_005869.1 + 6372 0.67 0.376535
Target:  5'- gGCGAugaacuggucgGGGUAGgUcCCG-GGCGGUCCg -3'
miRNA:   3'- aCGCU-----------CCCGUUgAuGGCgUCGCCAGG- -5'
27411 3' -58.1 NC_005869.1 + 3040 0.67 0.385572
Target:  5'- aGCGGGaGGUgguGCUGCacaaGCGGCGGg-- -3'
miRNA:   3'- aCGCUC-CCGu--UGAUGg---CGUCGCCagg -5'
27411 3' -58.1 NC_005869.1 + 11961 0.66 0.423118
Target:  5'- cGCGAGgcgggcucccGGCGACggccaGCCaGUGGCGGccUCCg -3'
miRNA:   3'- aCGCUC----------CCGUUGa----UGG-CGUCGCC--AGG- -5'
27411 3' -58.1 NC_005869.1 + 7246 0.66 0.432842
Target:  5'- cUGaCGuGGGCugguucuGCUGCCGCcgcugcuGCGG-CCu -3'
miRNA:   3'- -AC-GCuCCCGu------UGAUGGCGu------CGCCaGG- -5'
27411 3' -58.1 NC_005869.1 + 11762 0.66 0.432842
Target:  5'- gGCGAGgaagaggaGGCAGaagaguCCGCAggcggcgcuguGCGGUCCc -3'
miRNA:   3'- aCGCUC--------CCGUUgau---GGCGU-----------CGCCAGG- -5'
27411 3' -58.1 NC_005869.1 + 17473 0.66 0.432842
Target:  5'- cGCGgggcuaGGGGCGGCgugggUGCUGgAGCGGgcggcUCCa -3'
miRNA:   3'- aCGC------UCCCGUUG-----AUGGCgUCGCC-----AGG- -5'
27411 3' -58.1 NC_005869.1 + 9567 0.66 0.442695
Target:  5'- gGCGGGGGagaaGAggGCCGCuuccaGGCGGcggcugagcUCCg -3'
miRNA:   3'- aCGCUCCCg---UUgaUGGCG-----UCGCC---------AGG- -5'
27411 3' -58.1 NC_005869.1 + 29286 1.12 0.000163
Target:  5'- cUGCGAGGGCAACUACCGCAGCGGUCCg -3'
miRNA:   3'- -ACGCUCCCGUUGAUGGCGUCGCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.