Results 1 - 20 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 22422 | 0.66 | 0.442695 |
Target: 5'- aGCGGGG---ACUGCCaccucacgcGCcGCGGUCCc -3' miRNA: 3'- aCGCUCCcguUGAUGG---------CGuCGCCAGG- -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 28445 | 0.69 | 0.272458 |
Target: 5'- gUGCGAGacccaguGCGagcGCUGCCGCAGCGacgCCc -3' miRNA: 3'- -ACGCUCc------CGU---UGAUGGCGUCGCca-GG- -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 20292 | 0.7 | 0.251322 |
Target: 5'- gGUG-GGGCccAGgUACCGCGGCGGcacauaaagaggcUCCg -3' miRNA: 3'- aCGCuCCCG--UUgAUGGCGUCGCC-------------AGG- -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 29286 | 1.12 | 0.000163 |
Target: 5'- cUGCGAGGGCAACUACCGCAGCGGUCCg -3' miRNA: 3'- -ACGCUCCCGUUGAUGGCGUCGCCAGG- -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 7246 | 0.66 | 0.432842 |
Target: 5'- cUGaCGuGGGCugguucuGCUGCCGCcgcugcuGCGG-CCu -3' miRNA: 3'- -AC-GCuCCCGu------UGAUGGCGu------CGCCaGG- -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 11961 | 0.66 | 0.423118 |
Target: 5'- cGCGAGgcgggcucccGGCGACggccaGCCaGUGGCGGccUCCg -3' miRNA: 3'- aCGCUC----------CCGUUGa----UGG-CGUCGCC--AGG- -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 6372 | 0.67 | 0.376535 |
Target: 5'- gGCGAugaacuggucgGGGUAGgUcCCG-GGCGGUCCg -3' miRNA: 3'- aCGCU-----------CCCGUUgAuGGCgUCGCCAGG- -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 20365 | 0.67 | 0.367643 |
Target: 5'- gGCGGaGGCGACgcuccCUGCGGCGGcgCUg -3' miRNA: 3'- aCGCUcCCGUUGau---GGCGUCGCCa-GG- -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 10138 | 0.67 | 0.358895 |
Target: 5'- cGCGGGGGag---GCCGCAagcgcGCGG-CCu -3' miRNA: 3'- aCGCUCCCguugaUGGCGU-----CGCCaGG- -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 17077 | 0.69 | 0.272458 |
Target: 5'- cGCGGGGGCucgGCacggGCgGUGGUGGcCCg -3' miRNA: 3'- aCGCUCCCGu--UGa---UGgCGUCGCCaGG- -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 23382 | 0.69 | 0.286838 |
Target: 5'- gGCGAGGGCG---ACCGagAGCGcGUCg -3' miRNA: 3'- aCGCUCCCGUugaUGGCg-UCGC-CAGg -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 7171 | 0.67 | 0.358895 |
Target: 5'- -uUGAGGGCGuccugGCCGCcGCGGcUCUg -3' miRNA: 3'- acGCUCCCGUuga--UGGCGuCGCC-AGG- -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 9567 | 0.66 | 0.442695 |
Target: 5'- gGCGGGGGagaaGAggGCCGCuuccaGGCGGcggcugagcUCCg -3' miRNA: 3'- aCGCUCCCg---UUgaUGGCG-----UCGCC---------AGG- -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 21147 | 0.69 | 0.279574 |
Target: 5'- -cCGAGGGCAGCca--GCGGgGGUUCa -3' miRNA: 3'- acGCUCCCGUUGauggCGUCgCCAGG- -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 17473 | 0.66 | 0.432842 |
Target: 5'- cGCGgggcuaGGGGCGGCgugggUGCUGgAGCGGgcggcUCCa -3' miRNA: 3'- aCGC------UCCCGUUG-----AUGGCgUCGCC-----AGG- -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 31086 | 0.67 | 0.367643 |
Target: 5'- aGCGgcuGGGGCugaAGCUGCCcaGGCGG-CCg -3' miRNA: 3'- aCGC---UCCCG---UUGAUGGcgUCGCCaGG- -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 18409 | 0.69 | 0.279574 |
Target: 5'- uUGCGGaGGCGGCgGCUGCGGCGcaCCc -3' miRNA: 3'- -ACGCUcCCGUUGaUGGCGUCGCcaGG- -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 20975 | 0.69 | 0.258663 |
Target: 5'- cGCGAGGGCGGCU-CCucggucagggGCAGgGGg-- -3' miRNA: 3'- aCGCUCCCGUUGAuGG----------CGUCgCCagg -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 11762 | 0.66 | 0.432842 |
Target: 5'- gGCGAGgaagaggaGGCAGaagaguCCGCAggcggcgcuguGCGGUCCc -3' miRNA: 3'- aCGCUC--------CCGUUgau---GGCGU-----------CGCCAGG- -5' |
|||||||
27411 | 3' | -58.1 | NC_005869.1 | + | 3040 | 0.67 | 0.385572 |
Target: 5'- aGCGGGaGGUgguGCUGCacaaGCGGCGGg-- -3' miRNA: 3'- aCGCUC-CCGu--UGAUGg---CGUCGCCagg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home