Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27413 | 3' | -49.4 | NC_005869.1 | + | 17559 | 0.73 | 0.51127 |
Target: 5'- gGUGGGGACCAGugaggcGGUGGGC-UCGUCg -3' miRNA: 3'- gUACCUCUGGUUu-----CCAUUUGuGGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 17179 | 0.8 | 0.206632 |
Target: 5'- --cGGAGGCCGGGGGUcagggagcucuuGGcCACCGCCa -3' miRNA: 3'- guaCCUCUGGUUUCCA------------UUuGUGGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 16731 | 0.72 | 0.557167 |
Target: 5'- gGUGGAGAUggCAGAGGcuguCGCCGCg -3' miRNA: 3'- gUACCUCUG--GUUUCCauuuGUGGCGg -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 16573 | 0.67 | 0.866035 |
Target: 5'- -cUGGAGggGCUggGGG-AGGCaccggaACCGCCg -3' miRNA: 3'- guACCUC--UGGuuUCCaUUUG------UGGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 16470 | 0.7 | 0.675249 |
Target: 5'- --gGGGGACCGccgcugcgGGcGGgcGGCGCUGCCa -3' miRNA: 3'- guaCCUCUGGU--------UU-CCauUUGUGGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 15843 | 0.67 | 0.829123 |
Target: 5'- cCGUGGAGGCCAGAGaacUAccaaagcucuucAGC-CCGCUc -3' miRNA: 3'- -GUACCUCUGGUUUCc--AU------------UUGuGGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 15465 | 0.75 | 0.424826 |
Target: 5'- gGUGGAGGC----GGUAGcccgGCGCCGCCg -3' miRNA: 3'- gUACCUCUGguuuCCAUU----UGUGGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 15061 | 0.67 | 0.838741 |
Target: 5'- gGUGGuGACCccGAGGGUGcuCAgCaGCCg -3' miRNA: 3'- gUACCuCUGG--UUUCCAUuuGUgG-CGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 14992 | 0.66 | 0.873739 |
Target: 5'- --cGGGGugCAGcGGGUAAccgucaccgacgcGCGgCGCCg -3' miRNA: 3'- guaCCUCugGUU-UCCAUU-------------UGUgGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 14621 | 0.72 | 0.568837 |
Target: 5'- --cGGGGACCc--GGccacGGGCACCGCCu -3' miRNA: 3'- guaCCUCUGGuuuCCa---UUUGUGGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 11975 | 0.66 | 0.87458 |
Target: 5'- uGUGGAGACCuc-GGc---CAuCCGCCc -3' miRNA: 3'- gUACCUCUGGuuuCCauuuGU-GGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 11726 | 0.7 | 0.662261 |
Target: 5'- -cUGGGGcggcggcGgCGGGGGUGAGCGCgGCCu -3' miRNA: 3'- guACCUC-------UgGUUUCCAUUUGUGgCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 11606 | 0.66 | 0.87458 |
Target: 5'- --cGGGGACCGcggcgcguGAGGU-GGCAguccCCGCUg -3' miRNA: 3'- guaCCUCUGGU--------UUCCAuUUGU----GGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 10932 | 0.69 | 0.733284 |
Target: 5'- --aGGAGGCgGGGGGagUGAGCGCgGCg -3' miRNA: 3'- guaCCUCUGgUUUCC--AUUUGUGgCGg -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 10434 | 0.68 | 0.798874 |
Target: 5'- gGUGGAugUCAAGGGccuGACGCUGCUg -3' miRNA: 3'- gUACCUcuGGUUUCCau-UUGUGGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 10288 | 0.66 | 0.890788 |
Target: 5'- gAUGGGGAggaAGAGGaggGGGC-CCGCCc -3' miRNA: 3'- gUACCUCUgg-UUUCCa--UUUGuGGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 9769 | 0.7 | 0.687006 |
Target: 5'- --cGGGGcUCGGAGGgGAGCACCGUg -3' miRNA: 3'- guaCCUCuGGUUUCCaUUUGUGGCGg -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 9361 | 0.67 | 0.857208 |
Target: 5'- --cGGGGACgGGGGGcgcaggccggGGACGgCGCCg -3' miRNA: 3'- guaCCUCUGgUUUCCa---------UUUGUgGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 9263 | 0.67 | 0.848106 |
Target: 5'- --cGGGGGCguGcuGGGUccGGcCACCGCCg -3' miRNA: 3'- guaCCUCUGguU--UCCA--UUuGUGGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 8467 | 0.73 | 0.522609 |
Target: 5'- -cUGGAGGCgGAGGGUGGcGCGgCGCUc -3' miRNA: 3'- guACCUCUGgUUUCCAUU-UGUgGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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