miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27413 3' -49.4 NC_005869.1 + 29273 0.68 0.809177
Target:  5'- --gGGAGACCcagaucugcGAGGgcAACuACCGCa -3'
miRNA:   3'- guaCCUCUGGu--------UUCCauUUG-UGGCGg -5'
27413 3' -49.4 NC_005869.1 + 28444 0.69 0.766804
Target:  5'- aGUGcGAGACCc-AGuGcGAGCGCUGCCg -3'
miRNA:   3'- gUAC-CUCUGGuuUC-CaUUUGUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 28354 1.12 0.001326
Target:  5'- uCAUGGAGACCAAAGGUAAACACCGCCu -3'
miRNA:   3'- -GUACCUCUGGUUUCCAUUUGUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 26934 0.67 0.866035
Target:  5'- --aGGAGAgCCAGGGGacgcuuacGACAUCGUCc -3'
miRNA:   3'- guaCCUCU-GGUUUCCau------UUGUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 26568 0.69 0.766804
Target:  5'- --cGGAGuaGCCAGccAGGUAgGACACCuCCg -3'
miRNA:   3'- guaCCUC--UGGUU--UCCAU-UUGUGGcGG- -5'
27413 3' -49.4 NC_005869.1 + 26168 0.67 0.866035
Target:  5'- -cUGGAcGCCGcgcugcAGGUGGugGCCGUCc -3'
miRNA:   3'- guACCUcUGGUu-----UCCAUUugUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 26081 0.68 0.805081
Target:  5'- -cUGGAGACCuacaccuGGCACgGCCg -3'
miRNA:   3'- guACCUCUGGuuuccauUUGUGgCGG- -5'
27413 3' -49.4 NC_005869.1 + 25900 0.69 0.755772
Target:  5'- --aGGAGGCCcaGAAGuGcGAGCACUGCg -3'
miRNA:   3'- guaCCUCUGG--UUUC-CaUUUGUGGCGg -5'
27413 3' -49.4 NC_005869.1 + 25540 0.69 0.755772
Target:  5'- --cGGAGGCCGGcacgcGGGggcuccugcucGAGCGCCGCg -3'
miRNA:   3'- guaCCUCUGGUU-----UCCa----------UUUGUGGCGg -5'
27413 3' -49.4 NC_005869.1 + 24828 0.68 0.798874
Target:  5'- --cGGuGGCCGAGGccau-CGCCGCCc -3'
miRNA:   3'- guaCCuCUGGUUUCcauuuGUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 24425 0.7 0.703361
Target:  5'- --cGGAGGCCGccGAGGcgcccucgguggcgGAGCucaGCCGCCg -3'
miRNA:   3'- guaCCUCUGGU--UUCCa-------------UUUG---UGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 24231 0.73 0.534044
Target:  5'- --aGGAGGCCu-GGGgcAugGCCGaCCg -3'
miRNA:   3'- guaCCUCUGGuuUCCauUugUGGC-GG- -5'
27413 3' -49.4 NC_005869.1 + 24102 0.69 0.755772
Target:  5'- gCGUGGuGGCCGAccuGGcgcuGCugCGCCc -3'
miRNA:   3'- -GUACCuCUGGUUu--CCauu-UGugGCGG- -5'
27413 3' -49.4 NC_005869.1 + 22591 0.72 0.557167
Target:  5'- --gGGGGACU--AGGUGAACccggacCCGCCg -3'
miRNA:   3'- guaCCUCUGGuuUCCAUUUGu-----GGCGG- -5'
27413 3' -49.4 NC_005869.1 + 21212 0.69 0.721856
Target:  5'- cCGUGGccuGGCC--GGGcAAugACCGCCu -3'
miRNA:   3'- -GUACCu--CUGGuuUCCaUUugUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 20403 0.67 0.866035
Target:  5'- cCAUGGAGAUCAAucu----CACgGCCa -3'
miRNA:   3'- -GUACCUCUGGUUuccauuuGUGgCGG- -5'
27413 3' -49.4 NC_005869.1 + 19395 0.68 0.809177
Target:  5'- --gGGAGACCAGcagcgucuGGG-AGGCGgUGCCc -3'
miRNA:   3'- guaCCUCUGGUU--------UCCaUUUGUgGCGG- -5'
27413 3' -49.4 NC_005869.1 + 18890 0.66 0.87458
Target:  5'- uGUGG-GACU--GGGUGuccgcacaugcaAGCGCCGUCg -3'
miRNA:   3'- gUACCuCUGGuuUCCAU------------UUGUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 17870 0.7 0.698703
Target:  5'- --cGGGGGCCGauGAGGgguGGCAucCUGCCg -3'
miRNA:   3'- guaCCUCUGGU--UUCCau-UUGU--GGCGG- -5'
27413 3' -49.4 NC_005869.1 + 17801 0.69 0.765707
Target:  5'- --cGGAGACCGAGacuccgcGGUGggUuCCGCg -3'
miRNA:   3'- guaCCUCUGGUUU-------CCAUuuGuGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.