Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27413 | 3' | -49.4 | NC_005869.1 | + | 1957 | 0.68 | 0.809177 |
Target: 5'- gAUGcGGGACCAGGuGGUGcccaAGCGcCCGCg -3' miRNA: 3'- gUAC-CUCUGGUUU-CCAU----UUGU-GGCGg -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 3664 | 0.67 | 0.857208 |
Target: 5'- -uUGGAG-CC-AAGGUGAGgG-CGCCa -3' miRNA: 3'- guACCUCuGGuUUCCAUUUgUgGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 4387 | 0.67 | 0.857208 |
Target: 5'- -uUGGAG-CC-AAGGUGAGgG-CGCCa -3' miRNA: 3'- guACCUCuGGuUUCCAUUUgUgGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 4712 | 0.68 | 0.809177 |
Target: 5'- -uUGGAGACCGgcggcgaggggAAGaGUGAggGCGuuGCCc -3' miRNA: 3'- guACCUCUGGU-----------UUC-CAUU--UGUggCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 6464 | 0.67 | 0.857208 |
Target: 5'- uGUGGAggguGACCAcguccacgGAGGUGGcuaccuCGCCGCg -3' miRNA: 3'- gUACCU----CUGGU--------UUCCAUUu-----GUGGCGg -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 6790 | 0.77 | 0.304844 |
Target: 5'- --aGGAGGCCGAugaaguugGGGUAgcAGCGgCCGCCg -3' miRNA: 3'- guaCCUCUGGUU--------UCCAU--UUGU-GGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 6915 | 0.66 | 0.87458 |
Target: 5'- gGUGGAGuaAUCGAcGG-AGGCACCGgCg -3' miRNA: 3'- gUACCUC--UGGUUuCCaUUUGUGGCgG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 7951 | 0.75 | 0.414638 |
Target: 5'- uGUGGGGGUCu-AGGUAGACGCCGUg -3' miRNA: 3'- gUACCUCUGGuuUCCAUUUGUGGCGg -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 8467 | 0.73 | 0.522609 |
Target: 5'- -cUGGAGGCgGAGGGUGGcGCGgCGCUc -3' miRNA: 3'- guACCUCUGgUUUCCAUU-UGUgGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 9263 | 0.67 | 0.848106 |
Target: 5'- --cGGGGGCguGcuGGGUccGGcCACCGCCg -3' miRNA: 3'- guaCCUCUGguU--UCCA--UUuGUGGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 9361 | 0.67 | 0.857208 |
Target: 5'- --cGGGGACgGGGGGcgcaggccggGGACGgCGCCg -3' miRNA: 3'- guaCCUCUGgUUUCCa---------UUUGUgGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 9769 | 0.7 | 0.687006 |
Target: 5'- --cGGGGcUCGGAGGgGAGCACCGUg -3' miRNA: 3'- guaCCUCuGGUUUCCaUUUGUGGCGg -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 10288 | 0.66 | 0.890788 |
Target: 5'- gAUGGGGAggaAGAGGaggGGGC-CCGCCc -3' miRNA: 3'- gUACCUCUgg-UUUCCa--UUUGuGGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 10434 | 0.68 | 0.798874 |
Target: 5'- gGUGGAugUCAAGGGccuGACGCUGCUg -3' miRNA: 3'- gUACCUcuGGUUUCCau-UUGUGGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 10932 | 0.69 | 0.733284 |
Target: 5'- --aGGAGGCgGGGGGagUGAGCGCgGCg -3' miRNA: 3'- guaCCUCUGgUUUCC--AUUUGUGgCGg -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 11606 | 0.66 | 0.87458 |
Target: 5'- --cGGGGACCGcggcgcguGAGGU-GGCAguccCCGCUg -3' miRNA: 3'- guaCCUCUGGU--------UUCCAuUUGU----GGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 11726 | 0.7 | 0.662261 |
Target: 5'- -cUGGGGcggcggcGgCGGGGGUGAGCGCgGCCu -3' miRNA: 3'- guACCUC-------UgGUUUCCAUUUGUGgCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 11975 | 0.66 | 0.87458 |
Target: 5'- uGUGGAGACCuc-GGc---CAuCCGCCc -3' miRNA: 3'- gUACCUCUGGuuuCCauuuGU-GGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 14621 | 0.72 | 0.568837 |
Target: 5'- --cGGGGACCc--GGccacGGGCACCGCCu -3' miRNA: 3'- guaCCUCUGGuuuCCa---UUUGUGGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 14992 | 0.66 | 0.873739 |
Target: 5'- --cGGGGugCAGcGGGUAAccgucaccgacgcGCGgCGCCg -3' miRNA: 3'- guaCCUCugGUU-UCCAUU-------------UGUgGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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