miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27413 3' -49.4 NC_005869.1 + 28354 1.12 0.001326
Target:  5'- uCAUGGAGACCAAAGGUAAACACCGCCu -3'
miRNA:   3'- -GUACCUCUGGUUUCCAUUUGUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 17179 0.8 0.206632
Target:  5'- --cGGAGGCCGGGGGUcagggagcucuuGGcCACCGCCa -3'
miRNA:   3'- guaCCUCUGGUUUCCA------------UUuGUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 6790 0.77 0.304844
Target:  5'- --aGGAGGCCGAugaaguugGGGUAgcAGCGgCCGCCg -3'
miRNA:   3'- guaCCUCUGGUU--------UCCAU--UUGU-GGCGG- -5'
27413 3' -49.4 NC_005869.1 + 7951 0.75 0.414638
Target:  5'- uGUGGGGGUCu-AGGUAGACGCCGUg -3'
miRNA:   3'- gUACCUCUGGuuUCCAUUUGUGGCGg -5'
27413 3' -49.4 NC_005869.1 + 15465 0.75 0.424826
Target:  5'- gGUGGAGGC----GGUAGcccgGCGCCGCCg -3'
miRNA:   3'- gUACCUCUGguuuCCAUU----UGUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 17559 0.73 0.51127
Target:  5'- gGUGGGGACCAGugaggcGGUGGGC-UCGUCg -3'
miRNA:   3'- gUACCUCUGGUUu-----CCAUUUGuGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 8467 0.73 0.522609
Target:  5'- -cUGGAGGCgGAGGGUGGcGCGgCGCUc -3'
miRNA:   3'- guACCUCUGgUUUCCAUU-UGUgGCGG- -5'
27413 3' -49.4 NC_005869.1 + 24231 0.73 0.534044
Target:  5'- --aGGAGGCCu-GGGgcAugGCCGaCCg -3'
miRNA:   3'- guaCCUCUGGuuUCCauUugUGGC-GG- -5'
27413 3' -49.4 NC_005869.1 + 22591 0.72 0.557167
Target:  5'- --gGGGGACU--AGGUGAACccggacCCGCCg -3'
miRNA:   3'- guaCCUCUGGuuUCCAUUUGu-----GGCGG- -5'
27413 3' -49.4 NC_005869.1 + 16731 0.72 0.557167
Target:  5'- gGUGGAGAUggCAGAGGcuguCGCCGCg -3'
miRNA:   3'- gUACCUCUG--GUUUCCauuuGUGGCGg -5'
27413 3' -49.4 NC_005869.1 + 14621 0.72 0.568837
Target:  5'- --cGGGGACCc--GGccacGGGCACCGCCu -3'
miRNA:   3'- guaCCUCUGGuuuCCa---UUUGUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 11726 0.7 0.662261
Target:  5'- -cUGGGGcggcggcGgCGGGGGUGAGCGCgGCCu -3'
miRNA:   3'- guACCUC-------UgGUUUCCAUUUGUGgCGG- -5'
27413 3' -49.4 NC_005869.1 + 16470 0.7 0.675249
Target:  5'- --gGGGGACCGccgcugcgGGcGGgcGGCGCUGCCa -3'
miRNA:   3'- guaCCUCUGGU--------UU-CCauUUGUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 9769 0.7 0.687006
Target:  5'- --cGGGGcUCGGAGGgGAGCACCGUg -3'
miRNA:   3'- guaCCUCuGGUUUCCaUUUGUGGCGg -5'
27413 3' -49.4 NC_005869.1 + 17870 0.7 0.698703
Target:  5'- --cGGGGGCCGauGAGGgguGGCAucCUGCCg -3'
miRNA:   3'- guaCCUCUGGU--UUCCau-UUGU--GGCGG- -5'
27413 3' -49.4 NC_005869.1 + 24425 0.7 0.703361
Target:  5'- --cGGAGGCCGccGAGGcgcccucgguggcgGAGCucaGCCGCCg -3'
miRNA:   3'- guaCCUCUGGU--UUCCa-------------UUUG---UGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 21212 0.69 0.721856
Target:  5'- cCGUGGccuGGCC--GGGcAAugACCGCCu -3'
miRNA:   3'- -GUACCu--CUGGuuUCCaUUugUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 10932 0.69 0.733284
Target:  5'- --aGGAGGCgGGGGGagUGAGCGCgGCg -3'
miRNA:   3'- guaCCUCUGgUUUCC--AUUUGUGgCGg -5'
27413 3' -49.4 NC_005869.1 + 25900 0.69 0.755772
Target:  5'- --aGGAGGCCcaGAAGuGcGAGCACUGCg -3'
miRNA:   3'- guaCCUCUGG--UUUC-CaUUUGUGGCGg -5'
27413 3' -49.4 NC_005869.1 + 25540 0.69 0.755772
Target:  5'- --cGGAGGCCGGcacgcGGGggcuccugcucGAGCGCCGCg -3'
miRNA:   3'- guaCCUCUGGUU-----UCCa----------UUUGUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.