Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27414 | 3' | -58.3 | NC_005869.1 | + | 25193 | 0.67 | 0.384857 |
Target: 5'- aCCUGGccgccaccguggaGCGCGccGGCcACGGGGACCUg- -3' miRNA: 3'- -GGACC-------------UGCGC--CUGcUGCUCCUGGAga -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 6794 | 0.66 | 0.450584 |
Target: 5'- uUUGGACG-GGGCGugGcgucucggugauaAGGGCCUg- -3' miRNA: 3'- gGACCUGCgCCUGCugC-------------UCCUGGAga -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 16628 | 0.66 | 0.441786 |
Target: 5'- aCCgGGGCGCGcGGgGugGGGGGCa--- -3' miRNA: 3'- -GGaCCUGCGC-CUgCugCUCCUGgaga -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 19142 | 0.66 | 0.451568 |
Target: 5'- -gUGGACucugGCGGGCGcAgGAGGAUCUg- -3' miRNA: 3'- ggACCUG----CGCCUGC-UgCUCCUGGAga -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 7907 | 0.68 | 0.327385 |
Target: 5'- -aUGGugGgCGGugGACGGGGcggcgguguugagcuCCUCUc -3' miRNA: 3'- ggACCugC-GCCugCUGCUCCu--------------GGAGA- -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 15477 | 0.68 | 0.351094 |
Target: 5'- uCCUGGGCggcgGCGGGCGcuugGCG-GGACgUCc -3' miRNA: 3'- -GGACCUG----CGCCUGC----UGCuCCUGgAGa -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 9843 | 0.73 | 0.153189 |
Target: 5'- gCUGGAgGCGGAgGACGAGGAg---- -3' miRNA: 3'- gGACCUgCGCCUgCUGCUCCUggaga -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 17838 | 0.72 | 0.200813 |
Target: 5'- gCCgcgGGACGCGGGgguCGGCGAGGGgCg-- -3' miRNA: 3'- -GGa--CCUGCGCCU---GCUGCUCCUgGaga -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 27984 | 0.69 | 0.318708 |
Target: 5'- gCCgGaGACGCGGACuccgguGACGAGG-CCUg- -3' miRNA: 3'- -GGaC-CUGCGCCUG------CUGCUCCuGGAga -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 11640 | 0.68 | 0.368142 |
Target: 5'- uCCUGGuugGCGCGGAaGAUGGgcuGGACgUCg -3' miRNA: 3'- -GGACC---UGCGCCUgCUGCU---CCUGgAGa -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 20938 | 0.67 | 0.376877 |
Target: 5'- cCCgGGACG-GGACGcGCGAGaGGCCg-- -3' miRNA: 3'- -GGaCCUGCgCCUGC-UGCUC-CUGGaga -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 28111 | 1.09 | 0.000323 |
Target: 5'- uCCUGGACGCGGACGACGAGGACCUCUg -3' miRNA: 3'- -GGACCUGCGCCUGCUGCUCCUGGAGA- -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 9423 | 0.68 | 0.368142 |
Target: 5'- gUUGG-CGCGGcaGCuGACGGGGAUCUUUu -3' miRNA: 3'- gGACCuGCGCC--UG-CUGCUCCUGGAGA- -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 1699 | 0.69 | 0.281452 |
Target: 5'- gCCUGGuuUGCGGugGAUuugGAGGAgcaUCUCUa -3' miRNA: 3'- -GGACCu-GCGCCugCUG---CUCCU---GGAGA- -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 17296 | 0.67 | 0.403905 |
Target: 5'- aCCUcGGGCGCGG-CGACa---GCCUCUg -3' miRNA: 3'- -GGA-CCUGCGCCuGCUGcuccUGGAGA- -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 12784 | 0.66 | 0.451568 |
Target: 5'- aCCUGGAgcccagcuucuaCGCGG-CGcACcGGGACUUCa -3' miRNA: 3'- -GGACCU------------GCGCCuGC-UGcUCCUGGAGa -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 8465 | 0.66 | 0.432127 |
Target: 5'- cCCUGGAgGCGGAgggUGGCGcGG-CgCUCg -3' miRNA: 3'- -GGACCUgCGCCU---GCUGCuCCuG-GAGa -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 8219 | 0.66 | 0.432127 |
Target: 5'- --gGGAgGCgGGGCGGCG-GGcCCUCg -3' miRNA: 3'- ggaCCUgCG-CCUGCUGCuCCuGGAGa -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 25702 | 0.67 | 0.413183 |
Target: 5'- aCUGcGAccuCGCcgaGGAcaccucCGGCGAGGGCCUCUu -3' miRNA: 3'- gGAC-CU---GCG---CCU------GCUGCUCCUGGAGA- -5' |
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27414 | 3' | -58.3 | NC_005869.1 | + | 11555 | 0.69 | 0.295925 |
Target: 5'- aCCUGGAggagGCGGAgGAgGAGGAgCUg- -3' miRNA: 3'- -GGACCUg---CGCCUgCUgCUCCUgGAga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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