Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27417 | 3' | -65.5 | NC_005869.1 | + | 15281 | 0.71 | 0.061605 |
Target: 5'- -gGGCCaguCUGaAGGgacgcgugGCCCCCAGCACCAu -3' miRNA: 3'- uaCCGGg--GGC-UCC--------UGGGGGUCGUGGU- -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 24955 | 0.66 | 0.164576 |
Target: 5'- --cGCCCCuCGAGGACCUCCugguggucagcgacgAGCAgCu -3' miRNA: 3'- uacCGGGG-GCUCCUGGGGG---------------UCGUgGu -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 7650 | 0.66 | 0.16282 |
Target: 5'- -gGGUCCUCGGGGuCgUCCGGCagGCCGg -3' miRNA: 3'- uaCCGGGGGCUCCuGgGGGUCG--UGGU- -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 7362 | 0.66 | 0.158078 |
Target: 5'- -gGGUCCUCGGGGGCCaugacgcccuccuCCCAGU-CCGc -3' miRNA: 3'- uaCCGGGGGCUCCUGG-------------GGGUCGuGGU- -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 26158 | 0.66 | 0.153875 |
Target: 5'- --cGCCCCUccgGAGGaaGCCCauccgcagcagcaCCAGCACCAg -3' miRNA: 3'- uacCGGGGG---CUCC--UGGG-------------GGUCGUGGU- -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 12376 | 0.66 | 0.150179 |
Target: 5'- -aGGCCCCCGcugGGGAgCgCgGGCACg- -3' miRNA: 3'- uaCCGGGGGC---UCCUgGgGgUCGUGgu -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 4564 | 0.66 | 0.150179 |
Target: 5'- uUGuGUCCgCCGAGGuCCUCCAuGCACUc -3' miRNA: 3'- uAC-CGGG-GGCUCCuGGGGGU-CGUGGu -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 24392 | 0.67 | 0.124091 |
Target: 5'- -aGGUCCUgcagGAGGccGCCCCCGGCGCa- -3' miRNA: 3'- uaCCGGGGg---CUCC--UGGGGGUCGUGgu -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 26602 | 0.68 | 0.114249 |
Target: 5'- -cGGCCCgCCGAc-GCUCCUGGCGCCGc -3' miRNA: 3'- uaCCGGG-GGCUccUGGGGGUCGUGGU- -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 10737 | 0.68 | 0.105141 |
Target: 5'- -cGGCCCCCGAGcGGCaCCCacgGGUGCa- -3' miRNA: 3'- uaCCGGGGGCUC-CUG-GGGg--UCGUGgu -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 11599 | 0.71 | 0.065208 |
Target: 5'- -cGGUCCCCGGGGACCg-CGGCGCg- -3' miRNA: 3'- uaCCGGGGGCUCCUGGggGUCGUGgu -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 877 | 0.7 | 0.077274 |
Target: 5'- uGUGGUgUuuGAGGACCCaCUuGCGCCAc -3' miRNA: 3'- -UACCGgGggCUCCUGGG-GGuCGUGGU- -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 24428 | 0.7 | 0.077274 |
Target: 5'- -aGGCCgCCGAGGcGCCCUCGGUGgCGg -3' miRNA: 3'- uaCCGGgGGCUCC-UGGGGGUCGUgGU- -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 8234 | 0.7 | 0.079483 |
Target: 5'- -gGGCCCUcgggCGGGGGgUCCCAGCGCa- -3' miRNA: 3'- uaCCGGGG----GCUCCUgGGGGUCGUGgu -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 15061 | 0.69 | 0.094055 |
Target: 5'- gGUGGUgaCCCCGAGGGUgCUCAGCAgCCGa -3' miRNA: 3'- -UACCG--GGGGCUCCUGgGGGUCGU-GGU- -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 16513 | 0.69 | 0.100287 |
Target: 5'- cUGGCCCCCaagcgucgucugcagGAGGuggugguggagccGCCCgcuCCAGCACCc -3' miRNA: 3'- uACCGGGGG---------------CUCC-------------UGGG---GGUCGUGGu -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 14607 | 0.68 | 0.102259 |
Target: 5'- cUGGCCUacaacuaCGGGGACCCggCCacgGGCACCGc -3' miRNA: 3'- uACCGGGg------GCUCCUGGG--GG---UCGUGGU- -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 26683 | 1.06 | 0.000083 |
Target: 5'- cAUGGCCCCCGAGGACCCCCAGCACCAg -3' miRNA: 3'- -UACCGGGGGCUCCUGGGGGUCGUGGU- -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 17118 | 0.66 | 0.154291 |
Target: 5'- cAUGGCCaCCaGGGGcGCCUCCAGgACUg -3' miRNA: 3'- -UACCGG-GGgCUCC-UGGGGGUCgUGGu -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 33838 | 0.66 | 0.150179 |
Target: 5'- -cGGCCCCgccccgcgGAGGACcgCCCCAGgGCUc -3' miRNA: 3'- uaCCGGGGg-------CUCCUG--GGGGUCgUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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