Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27417 | 3' | -65.5 | NC_005869.1 | + | 18060 | 0.7 | 0.070995 |
Target: 5'- -cGGCgCCUGGGGcGCgugCCCAGCACCAg -3' miRNA: 3'- uaCCGgGGGCUCC-UGg--GGGUCGUGGU- -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 22448 | 0.72 | 0.050021 |
Target: 5'- -cGGUCCCCGGGGACCgaacuccuccucuuUCCAGCuCCu -3' miRNA: 3'- uaCCGGGGGCUCCUGG--------------GGGUCGuGGu -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 26394 | 0.75 | 0.029197 |
Target: 5'- -cGGacgaCCCCGAGGACCCCCuggccuaugcccAGCugCGg -3' miRNA: 3'- uaCCg---GGGGCUCCUGGGGG------------UCGugGU- -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 26038 | 0.68 | 0.108098 |
Target: 5'- -cGGCucCCCCGAGGGCaCCCGcCGCCu -3' miRNA: 3'- uaCCG--GGGGCUCCUGgGGGUcGUGGu -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 9982 | 0.68 | 0.117446 |
Target: 5'- -gGGCCgCgGAGGACCCCagcucacuGGCugCGc -3' miRNA: 3'- uaCCGGgGgCUCCUGGGGg-------UCGugGU- -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 8684 | 0.67 | 0.134713 |
Target: 5'- -cGGUCCUCGAGGcacugcugccagACCCCCAugGCggucuGCCAg -3' miRNA: 3'- uaCCGGGGGCUCC------------UGGGGGU--CG-----UGGU- -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 18191 | 0.67 | 0.134713 |
Target: 5'- -aGGCgCCCCGuacACCUCgGGCGCCAa -3' miRNA: 3'- uaCCG-GGGGCuccUGGGGgUCGUGGU- -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 30336 | 0.67 | 0.134713 |
Target: 5'- --cGCCUCCGAGGccgugGCCCgCAGCugUAu -3' miRNA: 3'- uacCGGGGGCUCC-----UGGGgGUCGugGU- -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 33838 | 0.66 | 0.150179 |
Target: 5'- -cGGCCCCgccccgcgGAGGACcgCCCCAGgGCUc -3' miRNA: 3'- uaCCGGGGg-------CUCCUG--GGGGUCgUGGu -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 17118 | 0.66 | 0.154291 |
Target: 5'- cAUGGCCaCCaGGGGcGCCUCCAGgACUg -3' miRNA: 3'- -UACCGG-GGgCUCC-UGGGGGUCgUGGu -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 22182 | 0.66 | 0.155963 |
Target: 5'- cUGGCUcgcgaagcgccgagaCCCGucGGCCgUCAGCGCCAu -3' miRNA: 3'- uACCGG---------------GGGCucCUGGgGGUCGUGGU- -5' |
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27417 | 3' | -65.5 | NC_005869.1 | + | 26683 | 1.06 | 0.000083 |
Target: 5'- cAUGGCCCCCGAGGACCCCCAGCACCAg -3' miRNA: 3'- -UACCGGGGGCUCCUGGGGGUCGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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