miRNA display CGI


Results 41 - 60 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27418 5' -56.7 NC_005869.1 + 13312 0.69 0.361056
Target:  5'- cGCCGCcg---CCGGccGCCGCcgCCGCGCCu -3'
miRNA:   3'- -CGGCGuagaaGGUC--UGGCG--GGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 25178 0.69 0.352395
Target:  5'- aCCGCAUCaccgucgaCCuGGCCGCCaccguggagCGCGCCg -3'
miRNA:   3'- cGGCGUAGaa------GGuCUGGCGG---------GUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 27614 0.69 0.344727
Target:  5'- uCCGCgaguucgugcccacgGUCUacaucaaccccuucUCCGGACCGCCCGgGaCCu -3'
miRNA:   3'- cGGCG---------------UAGA--------------AGGUCUGGCGGGUgU-GG- -5'
27418 5' -56.7 NC_005869.1 + 18562 0.69 0.327304
Target:  5'- cGCCGCGcgCggcggcgCCGGgcuACCGCCUcCACCg -3'
miRNA:   3'- -CGGCGUa-Gaa-----GGUC---UGGCGGGuGUGG- -5'
27418 5' -56.7 NC_005869.1 + 25703 0.7 0.311325
Target:  5'- cCUGCAggCUaccccCCAGACCgcgguggagcugGCCCGCGCCg -3'
miRNA:   3'- cGGCGUa-GAa----GGUCUGG------------CGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 24628 0.7 0.311325
Target:  5'- uGCCGCg----CCA-ACCGCCCACgaGCCg -3'
miRNA:   3'- -CGGCGuagaaGGUcUGGCGGGUG--UGG- -5'
27418 5' -56.7 NC_005869.1 + 26866 0.7 0.306648
Target:  5'- aGCCGCggCggCCAGGaCGCCCucaaaaucaggaaccGCACCc -3'
miRNA:   3'- -CGGCGuaGaaGGUCUgGCGGG---------------UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 27811 0.7 0.30356
Target:  5'- uUCGCcag--CCAGAUggaCGCCCGCACCa -3'
miRNA:   3'- cGGCGuagaaGGUCUG---GCGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 23638 0.7 0.30356
Target:  5'- aCCaGCAUCUgcacagCCAGAUCcaugGCCCGCuGCCa -3'
miRNA:   3'- cGG-CGUAGAa-----GGUCUGG----CGGGUG-UGG- -5'
27418 5' -56.7 NC_005869.1 + 26131 0.71 0.273995
Target:  5'- cGCCGCcccgUCC--ACCGCCCACcauGCCg -3'
miRNA:   3'- -CGGCGuagaAGGucUGGCGGGUG---UGG- -5'
27418 5' -56.7 NC_005869.1 + 21184 0.71 0.273995
Target:  5'- cGCCGCAUCagcaUCCAGuucgacuccuCCGUggCCugGCCg -3'
miRNA:   3'- -CGGCGUAGa---AGGUCu---------GGCG--GGugUGG- -5'
27418 5' -56.7 NC_005869.1 + 32361 0.71 0.260098
Target:  5'- gGCaUGCAgaaacUCUUCCguucgaGGACCGCCCACGgUa -3'
miRNA:   3'- -CG-GCGU-----AGAAGG------UCUGGCGGGUGUgG- -5'
27418 5' -56.7 NC_005869.1 + 23898 0.71 0.253368
Target:  5'- gGCCGCGcgCUUgCGGccuCC-CCCGCGCCg -3'
miRNA:   3'- -CGGCGUa-GAAgGUCu--GGcGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 26173 0.71 0.244834
Target:  5'- cGCCGCG-CUgcaggugguggccgUCCAGAgcCCGCCUGCAgCg -3'
miRNA:   3'- -CGGCGUaGA--------------AGGUCU--GGCGGGUGUgG- -5'
27418 5' -56.7 NC_005869.1 + 17367 0.72 0.234036
Target:  5'- gGCCGCcgCccgcUCCAGcGCCGCggCCGCGCUg -3'
miRNA:   3'- -CGGCGuaGa---AGGUC-UGGCG--GGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 22746 0.72 0.221252
Target:  5'- gGCCGCcacCUUCUcgcucaggcucauGGACCGCUCcuGCACCa -3'
miRNA:   3'- -CGGCGua-GAAGG-------------UCUGGCGGG--UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 28697 0.72 0.215958
Target:  5'- gGCCaccgaGCAgcc-CCAGACCGCCCccuuCACCg -3'
miRNA:   3'- -CGG-----CGUagaaGGUCUGGCGGGu---GUGG- -5'
27418 5' -56.7 NC_005869.1 + 26057 0.72 0.210203
Target:  5'- cGCCGCcUCUUCCucaccuauGACCuggagaCCUACACCu -3'
miRNA:   3'- -CGGCGuAGAAGGu-------CUGGc-----GGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 25420 0.73 0.193727
Target:  5'- cGCCGCGUC------AUCGCCCACGCCu -3'
miRNA:   3'- -CGGCGUAGaaggucUGGCGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 27075 0.74 0.156534
Target:  5'- cGCCGCcuucaauGUCUUCCAGAggcccaccaucagcuCCaacuCCCACGCCa -3'
miRNA:   3'- -CGGCG-------UAGAAGGUCU---------------GGc---GGGUGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.