miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27418 5' -56.7 NC_005869.1 + 14788 0.67 0.465616
Target:  5'- uGCCGCugcgCUcCCGGGCCuucuacaacaCCCAgGCCg -3'
miRNA:   3'- -CGGCGua--GAaGGUCUGGc---------GGGUgUGG- -5'
27418 5' -56.7 NC_005869.1 + 20641 0.67 0.465616
Target:  5'- gGCC-CAUCUcCUGGGCgCGCgUGCGCCa -3'
miRNA:   3'- -CGGcGUAGAaGGUCUG-GCGgGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 23061 0.67 0.455455
Target:  5'- uGCuCGUAggcCUgggCCAGGCUGgCCGCGCUc -3'
miRNA:   3'- -CG-GCGUa--GAa--GGUCUGGCgGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 21824 0.67 0.455455
Target:  5'- aGCCGCAccgaggcgUCaUCgAGGCCGUCUAC-CUg -3'
miRNA:   3'- -CGGCGU--------AGaAGgUCUGGCGGGUGuGG- -5'
27418 5' -56.7 NC_005869.1 + 27488 0.67 0.454445
Target:  5'- gGCCggacgGCAUCUUCCAGcucggaggcggagGCCGCuccuccuucaaCCcCACCg -3'
miRNA:   3'- -CGG-----CGUAGAAGGUC-------------UGGCG-----------GGuGUGG- -5'
27418 5' -56.7 NC_005869.1 + 18334 0.67 0.445415
Target:  5'- -aCGUggCcaaCCAGGCCGucuCCCACGCCg -3'
miRNA:   3'- cgGCGuaGaa-GGUCUGGC---GGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 15631 0.67 0.4355
Target:  5'- cGCCGCAgccgCCGccuCCGCaaaCGCACCu -3'
miRNA:   3'- -CGGCGUagaaGGUcu-GGCGg--GUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 24503 0.67 0.4355
Target:  5'- cGCUGCAUCa-UCAGugCGCUCA-GCCu -3'
miRNA:   3'- -CGGCGUAGaaGGUCugGCGGGUgUGG- -5'
27418 5' -56.7 NC_005869.1 + 15242 0.67 0.4355
Target:  5'- aGCCGCGg---CCGGAgCCGCggCCggACGCCg -3'
miRNA:   3'- -CGGCGUagaaGGUCU-GGCG--GG--UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 26954 0.67 0.425713
Target:  5'- -aCGaCAUCgUCCAGGCCaCCCuGCGCUa -3'
miRNA:   3'- cgGC-GUAGaAGGUCUGGcGGG-UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 18663 0.67 0.425713
Target:  5'- aGCUGCGUCccgagaCCAaACUGCCCGCcgugGCCc -3'
miRNA:   3'- -CGGCGUAGaa----GGUcUGGCGGGUG----UGG- -5'
27418 5' -56.7 NC_005869.1 + 16945 0.67 0.425713
Target:  5'- cGCCuGCAggaCUU--GGGCUGCCCGCGCa -3'
miRNA:   3'- -CGG-CGUa--GAAggUCUGGCGGGUGUGg -5'
27418 5' -56.7 NC_005869.1 + 22022 0.68 0.416059
Target:  5'- uGCUGCGccaUCgucaaCAcGGCCGCCCgccACACCg -3'
miRNA:   3'- -CGGCGU---AGaag--GU-CUGGCGGG---UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 33831 0.68 0.406539
Target:  5'- cGCCGC-UCggCCccgccccgcggaGGACCGCCCcagggcucCACCc -3'
miRNA:   3'- -CGGCGuAGaaGG------------UCUGGCGGGu-------GUGG- -5'
27418 5' -56.7 NC_005869.1 + 30397 0.68 0.406539
Target:  5'- uGCCGCAgcUCcgCCAGcgccuGCCGCaUCAUGCCc -3'
miRNA:   3'- -CGGCGU--AGaaGGUC-----UGGCG-GGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 26435 0.68 0.406539
Target:  5'- cGCCGCcgCcugCgCGGGCCGCCC-CucuuCCu -3'
miRNA:   3'- -CGGCGuaGaa-G-GUCUGGCGGGuGu---GG- -5'
27418 5' -56.7 NC_005869.1 + 16550 0.68 0.406539
Target:  5'- aGCCGCccgC-UCCAG-Ca-CCCACGCCg -3'
miRNA:   3'- -CGGCGua-GaAGGUCuGgcGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 30066 0.68 0.387917
Target:  5'- uCCGCGUCaguugUCCuccgcgcauGGACCGCUCcucuugcucGCGCCg -3'
miRNA:   3'- cGGCGUAGa----AGG---------UCUGGCGGG---------UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 16774 0.68 0.378819
Target:  5'- aGCCucccCGUCU-CCAucauGCCGCCCAcCGCCa -3'
miRNA:   3'- -CGGc---GUAGAaGGUc---UGGCGGGU-GUGG- -5'
27418 5' -56.7 NC_005869.1 + 17537 0.68 0.368977
Target:  5'- cGCCGCcgUaccCCGGuggcgguggcagcGCCGCCCGC-CCg -3'
miRNA:   3'- -CGGCGuaGaa-GGUC-------------UGGCGGGUGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.