miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27418 5' -56.7 NC_005869.1 + 21184 0.71 0.273995
Target:  5'- cGCCGCAUCagcaUCCAGuucgacuccuCCGUggCCugGCCg -3'
miRNA:   3'- -CGGCGUAGa---AGGUCu---------GGCG--GGugUGG- -5'
27418 5' -56.7 NC_005869.1 + 21454 0.75 0.13104
Target:  5'- cGCCGCGUCgUCCucgUCGCCCaACGCCc -3'
miRNA:   3'- -CGGCGUAGaAGGucuGGCGGG-UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 21824 0.67 0.455455
Target:  5'- aGCCGCAccgaggcgUCaUCgAGGCCGUCUAC-CUg -3'
miRNA:   3'- -CGGCGU--------AGaAGgUCUGGCGGGUGuGG- -5'
27418 5' -56.7 NC_005869.1 + 22022 0.68 0.416059
Target:  5'- uGCUGCGccaUCgucaaCAcGGCCGCCCgccACACCg -3'
miRNA:   3'- -CGGCGU---AGaag--GU-CUGGCGGG---UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 22745 0.81 0.051519
Target:  5'- gGCCGCGUCUgcaUCaGGGCgGCCCACAUCu -3'
miRNA:   3'- -CGGCGUAGA---AGgUCUGgCGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 22746 0.72 0.221252
Target:  5'- gGCCGCcacCUUCUcgcucaggcucauGGACCGCUCcuGCACCa -3'
miRNA:   3'- -CGGCGua-GAAGG-------------UCUGGCGGG--UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 22822 0.67 0.475893
Target:  5'- aGCCaGCggCUcUCGGGCgCGCCCAgGCUc -3'
miRNA:   3'- -CGG-CGuaGAaGGUCUG-GCGGGUgUGG- -5'
27418 5' -56.7 NC_005869.1 + 23061 0.67 0.455455
Target:  5'- uGCuCGUAggcCUgggCCAGGCUGgCCGCGCUc -3'
miRNA:   3'- -CG-GCGUa--GAa--GGUCUGGCgGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 23321 0.66 0.486282
Target:  5'- gGCCGCcgCgcCCGacaGCCGCgCCAgGCCc -3'
miRNA:   3'- -CGGCGuaGaaGGUc--UGGCG-GGUgUGG- -5'
27418 5' -56.7 NC_005869.1 + 23437 0.67 0.475893
Target:  5'- --gGCGUCUUCagacccGCCGCCUuCACCa -3'
miRNA:   3'- cggCGUAGAAGguc---UGGCGGGuGUGG- -5'
27418 5' -56.7 NC_005869.1 + 23613 0.66 0.496778
Target:  5'- cCCGguUCUUUuugaCAGAgCGCCCucgacuGCGCCc -3'
miRNA:   3'- cGGCguAGAAG----GUCUgGCGGG------UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 23638 0.7 0.30356
Target:  5'- aCCaGCAUCUgcacagCCAGAUCcaugGCCCGCuGCCa -3'
miRNA:   3'- cGG-CGUAGAa-----GGUCUGG----CGGGUG-UGG- -5'
27418 5' -56.7 NC_005869.1 + 23768 0.66 0.514848
Target:  5'- cCC-CAUCUUCgcccuuccuccucgCGGGCCGCgCCGuCGCCg -3'
miRNA:   3'- cGGcGUAGAAG--------------GUCUGGCG-GGU-GUGG- -5'
27418 5' -56.7 NC_005869.1 + 23898 0.71 0.253368
Target:  5'- gGCCGCGcgCUUgCGGccuCC-CCCGCGCCg -3'
miRNA:   3'- -CGGCGUa-GAAgGUCu--GGcGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 24503 0.67 0.4355
Target:  5'- cGCUGCAUCa-UCAGugCGCUCA-GCCu -3'
miRNA:   3'- -CGGCGUAGaaGGUCugGCGGGUgUGG- -5'
27418 5' -56.7 NC_005869.1 + 24628 0.7 0.311325
Target:  5'- uGCCGCg----CCA-ACCGCCCACgaGCCg -3'
miRNA:   3'- -CGGCGuagaaGGUcUGGCGGGUG--UGG- -5'
27418 5' -56.7 NC_005869.1 + 25178 0.69 0.352395
Target:  5'- aCCGCAUCaccgucgaCCuGGCCGCCaccguggagCGCGCCg -3'
miRNA:   3'- cGGCGUAGaa------GGuCUGGCGG---------GUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 25420 0.73 0.193727
Target:  5'- cGCCGCGUC------AUCGCCCACGCCu -3'
miRNA:   3'- -CGGCGUAGaaggucUGGCGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 25440 0.67 0.465616
Target:  5'- cUCGCGUCUgcgCCGcGACCaccuCCCGCugCc -3'
miRNA:   3'- cGGCGUAGAa--GGU-CUGGc---GGGUGugG- -5'
27418 5' -56.7 NC_005869.1 + 25703 0.7 0.311325
Target:  5'- cCUGCAggCUaccccCCAGACCgcgguggagcugGCCCGCGCCg -3'
miRNA:   3'- cGGCGUa-GAa----GGUCUGG------------CGGGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.