miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27418 5' -56.7 NC_005869.1 + 2051 0.66 0.528845
Target:  5'- gGCCGgAUCUggUUUAGaucGCCGCCgGC-CCg -3'
miRNA:   3'- -CGGCgUAGA--AGGUC---UGGCGGgUGuGG- -5'
27418 5' -56.7 NC_005869.1 + 6500 0.66 0.485239
Target:  5'- cGCCGCGgaggggcUCguuggUCCAGcagaggcgGCCGCCCuuGCg -3'
miRNA:   3'- -CGGCGU-------AGa----AGGUC--------UGGCGGGugUGg -5'
27418 5' -56.7 NC_005869.1 + 13312 0.69 0.361056
Target:  5'- cGCCGCcg---CCGGccGCCGCcgCCGCGCCu -3'
miRNA:   3'- -CGGCGuagaaGGUC--UGGCG--GGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 14788 0.67 0.465616
Target:  5'- uGCCGCugcgCUcCCGGGCCuucuacaacaCCCAgGCCg -3'
miRNA:   3'- -CGGCGua--GAaGGUCUGGc---------GGGUgUGG- -5'
27418 5' -56.7 NC_005869.1 + 15242 0.67 0.4355
Target:  5'- aGCCGCGg---CCGGAgCCGCggCCggACGCCg -3'
miRNA:   3'- -CGGCGUagaaGGUCU-GGCG--GG--UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 15339 0.66 0.518065
Target:  5'- gGCCGaCGUggUCaacgcGAUCGCCgGCGCCa -3'
miRNA:   3'- -CGGC-GUAgaAGgu---CUGGCGGgUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 15631 0.67 0.4355
Target:  5'- cGCCGCAgccgCCGccuCCGCaaaCGCACCu -3'
miRNA:   3'- -CGGCGUagaaGGUcu-GGCGg--GUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 16550 0.68 0.406539
Target:  5'- aGCCGCccgC-UCCAG-Ca-CCCACGCCg -3'
miRNA:   3'- -CGGCGua-GaAGGUCuGgcGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 16601 0.66 0.528845
Target:  5'- cGCCGCGggcgCCGGGCCaCCgGaacCACCg -3'
miRNA:   3'- -CGGCGUagaaGGUCUGGcGGgU---GUGG- -5'
27418 5' -56.7 NC_005869.1 + 16774 0.68 0.378819
Target:  5'- aGCCucccCGUCU-CCAucauGCCGCCCAcCGCCa -3'
miRNA:   3'- -CGGc---GUAGAaGGUc---UGGCGGGU-GUGG- -5'
27418 5' -56.7 NC_005869.1 + 16945 0.67 0.425713
Target:  5'- cGCCuGCAggaCUU--GGGCUGCCCGCGCa -3'
miRNA:   3'- -CGG-CGUa--GAAggUCUGGCGGGUGUGg -5'
27418 5' -56.7 NC_005869.1 + 17367 0.72 0.234036
Target:  5'- gGCCGCcgCccgcUCCAGcGCCGCggCCGCGCUg -3'
miRNA:   3'- -CGGCGuaGa---AGGUC-UGGCG--GGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 17491 0.66 0.486282
Target:  5'- cCCGCG-CgcgCCGcGugCGCCuCGCGCCc -3'
miRNA:   3'- cGGCGUaGaa-GGU-CugGCGG-GUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 17537 0.68 0.368977
Target:  5'- cGCCGCcgUaccCCGGuggcgguggcagcGCCGCCCGC-CCg -3'
miRNA:   3'- -CGGCGuaGaa-GGUC-------------UGGCGGGUGuGG- -5'
27418 5' -56.7 NC_005869.1 + 18045 0.66 0.486282
Target:  5'- cGCCGCcccgUCCAGcggcGCCuggggcgcguGCCCAgCACCa -3'
miRNA:   3'- -CGGCGuagaAGGUC----UGG----------CGGGU-GUGG- -5'
27418 5' -56.7 NC_005869.1 + 18334 0.67 0.445415
Target:  5'- -aCGUggCcaaCCAGGCCGucuCCCACGCCg -3'
miRNA:   3'- cgGCGuaGaa-GGUCUGGC---GGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 18562 0.69 0.327304
Target:  5'- cGCCGCGcgCggcggcgCCGGgcuACCGCCUcCACCg -3'
miRNA:   3'- -CGGCGUa-Gaa-----GGUC---UGGCGGGuGUGG- -5'
27418 5' -56.7 NC_005869.1 + 18663 0.67 0.425713
Target:  5'- aGCUGCGUCccgagaCCAaACUGCCCGCcgugGCCc -3'
miRNA:   3'- -CGGCGUAGaa----GGUcUGGCGGGUG----UGG- -5'
27418 5' -56.7 NC_005869.1 + 20641 0.67 0.465616
Target:  5'- gGCC-CAUCUcCUGGGCgCGCgUGCGCCa -3'
miRNA:   3'- -CGGcGUAGAaGGUCUG-GCGgGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 20788 0.75 0.134814
Target:  5'- -gCGCGUCccacUCCAGGCUGUCgGCGCCg -3'
miRNA:   3'- cgGCGUAGa---AGGUCUGGCGGgUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.