miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27418 5' -56.7 NC_005869.1 + 25926 1.01 0.001629
Target:  5'- gGCCGCAUCUUCCAGACCGCCCaaccugcuccguGCGCCg -3'
miRNA:   3'- -CGGCGUAGAAGGUCUGGCGGG------------UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 22745 0.81 0.051519
Target:  5'- gGCCGCGUCUgcaUCaGGGCgGCCCACAUCu -3'
miRNA:   3'- -CGGCGUAGA---AGgUCUGgCGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 26084 0.78 0.087547
Target:  5'- gGCCacgGCGUCUaCCuAGACC-CCCACACCg -3'
miRNA:   3'- -CGG---CGUAGAaGG-UCUGGcGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 21454 0.75 0.13104
Target:  5'- cGCCGCGUCgUCCucgUCGCCCaACGCCc -3'
miRNA:   3'- -CGGCGUAGaAGGucuGGCGGG-UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 20788 0.75 0.134814
Target:  5'- -gCGCGUCccacUCCAGGCUGUCgGCGCCg -3'
miRNA:   3'- cgGCGUAGa---AGGUCUGGCGGgUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 27075 0.74 0.156534
Target:  5'- cGCCGCcuucaauGUCUUCCAGAggcccaccaucagcuCCaacuCCCACGCCa -3'
miRNA:   3'- -CGGCG-------UAGAAGGUCU---------------GGc---GGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 25420 0.73 0.193727
Target:  5'- cGCCGCGUC------AUCGCCCACGCCu -3'
miRNA:   3'- -CGGCGUAGaaggucUGGCGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 26057 0.72 0.210203
Target:  5'- cGCCGCcUCUUCCucaccuauGACCuggagaCCUACACCu -3'
miRNA:   3'- -CGGCGuAGAAGGu-------CUGGc-----GGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 28697 0.72 0.215958
Target:  5'- gGCCaccgaGCAgcc-CCAGACCGCCCccuuCACCg -3'
miRNA:   3'- -CGG-----CGUagaaGGUCUGGCGGGu---GUGG- -5'
27418 5' -56.7 NC_005869.1 + 22746 0.72 0.221252
Target:  5'- gGCCGCcacCUUCUcgcucaggcucauGGACCGCUCcuGCACCa -3'
miRNA:   3'- -CGGCGua-GAAGG-------------UCUGGCGGG--UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 17367 0.72 0.234036
Target:  5'- gGCCGCcgCccgcUCCAGcGCCGCggCCGCGCUg -3'
miRNA:   3'- -CGGCGuaGa---AGGUC-UGGCG--GGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 26173 0.71 0.244834
Target:  5'- cGCCGCG-CUgcaggugguggccgUCCAGAgcCCGCCUGCAgCg -3'
miRNA:   3'- -CGGCGUaGA--------------AGGUCU--GGCGGGUGUgG- -5'
27418 5' -56.7 NC_005869.1 + 23898 0.71 0.253368
Target:  5'- gGCCGCGcgCUUgCGGccuCC-CCCGCGCCg -3'
miRNA:   3'- -CGGCGUa-GAAgGUCu--GGcGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 32361 0.71 0.260098
Target:  5'- gGCaUGCAgaaacUCUUCCguucgaGGACCGCCCACGgUa -3'
miRNA:   3'- -CG-GCGU-----AGAAGG------UCUGGCGGGUGUgG- -5'
27418 5' -56.7 NC_005869.1 + 26131 0.71 0.273995
Target:  5'- cGCCGCcccgUCC--ACCGCCCACcauGCCg -3'
miRNA:   3'- -CGGCGuagaAGGucUGGCGGGUG---UGG- -5'
27418 5' -56.7 NC_005869.1 + 21184 0.71 0.273995
Target:  5'- cGCCGCAUCagcaUCCAGuucgacuccuCCGUggCCugGCCg -3'
miRNA:   3'- -CGGCGUAGa---AGGUCu---------GGCG--GGugUGG- -5'
27418 5' -56.7 NC_005869.1 + 23638 0.7 0.30356
Target:  5'- aCCaGCAUCUgcacagCCAGAUCcaugGCCCGCuGCCa -3'
miRNA:   3'- cGG-CGUAGAa-----GGUCUGG----CGGGUG-UGG- -5'
27418 5' -56.7 NC_005869.1 + 27811 0.7 0.30356
Target:  5'- uUCGCcag--CCAGAUggaCGCCCGCACCa -3'
miRNA:   3'- cGGCGuagaaGGUCUG---GCGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 26866 0.7 0.306648
Target:  5'- aGCCGCggCggCCAGGaCGCCCucaaaaucaggaaccGCACCc -3'
miRNA:   3'- -CGGCGuaGaaGGUCUgGCGGG---------------UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 25703 0.7 0.311325
Target:  5'- cCUGCAggCUaccccCCAGACCgcgguggagcugGCCCGCGCCg -3'
miRNA:   3'- cGGCGUa-GAa----GGUCUGG------------CGGGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.