miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27418 5' -56.7 NC_005869.1 + 14788 0.67 0.465616
Target:  5'- uGCCGCugcgCUcCCGGGCCuucuacaacaCCCAgGCCg -3'
miRNA:   3'- -CGGCGua--GAaGGUCUGGc---------GGGUgUGG- -5'
27418 5' -56.7 NC_005869.1 + 16774 0.68 0.378819
Target:  5'- aGCCucccCGUCU-CCAucauGCCGCCCAcCGCCa -3'
miRNA:   3'- -CGGc---GUAGAaGGUc---UGGCGGGU-GUGG- -5'
27418 5' -56.7 NC_005869.1 + 16550 0.68 0.406539
Target:  5'- aGCCGCccgC-UCCAG-Ca-CCCACGCCg -3'
miRNA:   3'- -CGGCGua-GaAGGUCuGgcGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 22022 0.68 0.416059
Target:  5'- uGCUGCGccaUCgucaaCAcGGCCGCCCgccACACCg -3'
miRNA:   3'- -CGGCGU---AGaag--GU-CUGGCGGG---UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 18663 0.67 0.425713
Target:  5'- aGCUGCGUCccgagaCCAaACUGCCCGCcgugGCCc -3'
miRNA:   3'- -CGGCGUAGaa----GGUcUGGCGGGUG----UGG- -5'
27418 5' -56.7 NC_005869.1 + 15631 0.67 0.4355
Target:  5'- cGCCGCAgccgCCGccuCCGCaaaCGCACCu -3'
miRNA:   3'- -CGGCGUagaaGGUcu-GGCGg--GUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 18334 0.67 0.445415
Target:  5'- -aCGUggCcaaCCAGGCCGucuCCCACGCCg -3'
miRNA:   3'- cgGCGuaGaa-GGUCUGGC---GGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 27488 0.67 0.454445
Target:  5'- gGCCggacgGCAUCUUCCAGcucggaggcggagGCCGCuccuccuucaaCCcCACCg -3'
miRNA:   3'- -CGG-----CGUAGAAGGUC-------------UGGCG-----------GGuGUGG- -5'
27418 5' -56.7 NC_005869.1 + 21824 0.67 0.455455
Target:  5'- aGCCGCAccgaggcgUCaUCgAGGCCGUCUAC-CUg -3'
miRNA:   3'- -CGGCGU--------AGaAGgUCUGGCGGGUGuGG- -5'
27418 5' -56.7 NC_005869.1 + 17537 0.68 0.368977
Target:  5'- cGCCGCcgUaccCCGGuggcgguggcagcGCCGCCCGC-CCg -3'
miRNA:   3'- -CGGCGuaGaa-GGUC-------------UGGCGGGUGuGG- -5'
27418 5' -56.7 NC_005869.1 + 13312 0.69 0.361056
Target:  5'- cGCCGCcg---CCGGccGCCGCcgCCGCGCCu -3'
miRNA:   3'- -CGGCGuagaaGGUC--UGGCG--GGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 27614 0.69 0.344727
Target:  5'- uCCGCgaguucgugcccacgGUCUacaucaaccccuucUCCGGACCGCCCGgGaCCu -3'
miRNA:   3'- cGGCG---------------UAGA--------------AGGUCUGGCGGGUgU-GG- -5'
27418 5' -56.7 NC_005869.1 + 26084 0.78 0.087547
Target:  5'- gGCCacgGCGUCUaCCuAGACC-CCCACACCg -3'
miRNA:   3'- -CGG---CGUAGAaGG-UCUGGcGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 23898 0.71 0.253368
Target:  5'- gGCCGCGcgCUUgCGGccuCC-CCCGCGCCg -3'
miRNA:   3'- -CGGCGUa-GAAgGUCu--GGcGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 32361 0.71 0.260098
Target:  5'- gGCaUGCAgaaacUCUUCCguucgaGGACCGCCCACGgUa -3'
miRNA:   3'- -CG-GCGU-----AGAAGG------UCUGGCGGGUGUgG- -5'
27418 5' -56.7 NC_005869.1 + 21184 0.71 0.273995
Target:  5'- cGCCGCAUCagcaUCCAGuucgacuccuCCGUggCCugGCCg -3'
miRNA:   3'- -CGGCGUAGa---AGGUCu---------GGCG--GGugUGG- -5'
27418 5' -56.7 NC_005869.1 + 26131 0.71 0.273995
Target:  5'- cGCCGCcccgUCC--ACCGCCCACcauGCCg -3'
miRNA:   3'- -CGGCGuagaAGGucUGGCGGGUG---UGG- -5'
27418 5' -56.7 NC_005869.1 + 23638 0.7 0.30356
Target:  5'- aCCaGCAUCUgcacagCCAGAUCcaugGCCCGCuGCCa -3'
miRNA:   3'- cGG-CGUAGAa-----GGUCUGG----CGGGUG-UGG- -5'
27418 5' -56.7 NC_005869.1 + 26866 0.7 0.306648
Target:  5'- aGCCGCggCggCCAGGaCGCCCucaaaaucaggaaccGCACCc -3'
miRNA:   3'- -CGGCGuaGaaGGUCUgGCGGG---------------UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 24628 0.7 0.311325
Target:  5'- uGCCGCg----CCA-ACCGCCCACgaGCCg -3'
miRNA:   3'- -CGGCGuagaaGGUcUGGCGGGUG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.