miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27418 5' -56.7 NC_005869.1 + 25854 0.66 0.528845
Target:  5'- cGCCuGC-UCUUCacccaGGGCCGCUgcCACCu -3'
miRNA:   3'- -CGG-CGuAGAAGg----UCUGGCGGguGUGG- -5'
27418 5' -56.7 NC_005869.1 + 16945 0.67 0.425713
Target:  5'- cGCCuGCAggaCUU--GGGCUGCCCGCGCa -3'
miRNA:   3'- -CGG-CGUa--GAAggUCUGGCGGGUGUGg -5'
27418 5' -56.7 NC_005869.1 + 30397 0.68 0.406539
Target:  5'- uGCCGCAgcUCcgCCAGcgccuGCCGCaUCAUGCCc -3'
miRNA:   3'- -CGGCGU--AGaaGGUC-----UGGCG-GGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 25926 1.01 0.001629
Target:  5'- gGCCGCAUCUUCCAGACCGCCCaaccugcuccguGCGCCg -3'
miRNA:   3'- -CGGCGUAGAAGGUCUGGCGGG------------UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 23613 0.66 0.496778
Target:  5'- cCCGguUCUUUuugaCAGAgCGCCCucgacuGCGCCc -3'
miRNA:   3'- cGGCguAGAAG----GUCUgGCGGG------UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 23321 0.66 0.486282
Target:  5'- gGCCGCcgCgcCCGacaGCCGCgCCAgGCCc -3'
miRNA:   3'- -CGGCGuaGaaGGUc--UGGCG-GGUgUGG- -5'
27418 5' -56.7 NC_005869.1 + 27167 0.67 0.475893
Target:  5'- cGCCGCAccUCggCCGaACCuCCuCGCGCCc -3'
miRNA:   3'- -CGGCGU--AGaaGGUcUGGcGG-GUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 22822 0.67 0.475893
Target:  5'- aGCCaGCggCUcUCGGGCgCGCCCAgGCUc -3'
miRNA:   3'- -CGG-CGuaGAaGGUCUG-GCGGGUgUGG- -5'
27418 5' -56.7 NC_005869.1 + 25440 0.67 0.465616
Target:  5'- cUCGCGUCUgcgCCGcGACCaccuCCCGCugCc -3'
miRNA:   3'- cGGCGUAGAa--GGU-CUGGc---GGGUGugG- -5'
27418 5' -56.7 NC_005869.1 + 26954 0.67 0.425713
Target:  5'- -aCGaCAUCgUCCAGGCCaCCCuGCGCUa -3'
miRNA:   3'- cgGC-GUAGaAGGUCUGGcGGG-UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 23061 0.67 0.455455
Target:  5'- uGCuCGUAggcCUgggCCAGGCUGgCCGCGCUc -3'
miRNA:   3'- -CG-GCGUa--GAa--GGUCUGGCgGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 27365 0.67 0.465616
Target:  5'- aCCGCGc---CCuGGCCGCCCGcCGCUg -3'
miRNA:   3'- cGGCGUagaaGGuCUGGCGGGU-GUGG- -5'
27418 5' -56.7 NC_005869.1 + 16601 0.66 0.528845
Target:  5'- cGCCGCGggcgCCGGGCCaCCgGaacCACCg -3'
miRNA:   3'- -CGGCGUagaaGGUCUGGcGGgU---GUGG- -5'
27418 5' -56.7 NC_005869.1 + 15242 0.67 0.4355
Target:  5'- aGCCGCGg---CCGGAgCCGCggCCggACGCCg -3'
miRNA:   3'- -CGGCGUagaaGGUCU-GGCG--GG--UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 30333 0.66 0.528845
Target:  5'- gGCCGCc---UCCgAGGCCgugGCCCGCAgCu -3'
miRNA:   3'- -CGGCGuagaAGG-UCUGG---CGGGUGUgG- -5'
27418 5' -56.7 NC_005869.1 + 29321 0.67 0.465616
Target:  5'- cCCuaAUCccCCAGACCGCCacccuCAUGCCa -3'
miRNA:   3'- cGGcgUAGaaGGUCUGGCGG-----GUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 24503 0.67 0.4355
Target:  5'- cGCUGCAUCa-UCAGugCGCUCA-GCCu -3'
miRNA:   3'- -CGGCGUAGaaGGUCugGCGGGUgUGG- -5'
27418 5' -56.7 NC_005869.1 + 33831 0.68 0.406539
Target:  5'- cGCCGC-UCggCCccgccccgcggaGGACCGCCCcagggcucCACCc -3'
miRNA:   3'- -CGGCGuAGaaGG------------UCUGGCGGGu-------GUGG- -5'
27418 5' -56.7 NC_005869.1 + 29602 0.66 0.501004
Target:  5'- cGCCGCGaccagagcggcaacaUCUccaaccucaagaUCCAGGCCaaguaCCACAUCa -3'
miRNA:   3'- -CGGCGU---------------AGA------------AGGUCUGGcg---GGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 18045 0.66 0.486282
Target:  5'- cGCCGCcccgUCCAGcggcGCCuggggcgcguGCCCAgCACCa -3'
miRNA:   3'- -CGGCGuagaAGGUC----UGG----------CGGGU-GUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.