miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27418 5' -56.7 NC_005869.1 + 21184 0.71 0.273995
Target:  5'- cGCCGCAUCagcaUCCAGuucgacuccuCCGUggCCugGCCg -3'
miRNA:   3'- -CGGCGUAGa---AGGUCu---------GGCG--GGugUGG- -5'
27418 5' -56.7 NC_005869.1 + 26131 0.71 0.273995
Target:  5'- cGCCGCcccgUCC--ACCGCCCACcauGCCg -3'
miRNA:   3'- -CGGCGuagaAGGucUGGCGGGUG---UGG- -5'
27418 5' -56.7 NC_005869.1 + 23638 0.7 0.30356
Target:  5'- aCCaGCAUCUgcacagCCAGAUCcaugGCCCGCuGCCa -3'
miRNA:   3'- cGG-CGUAGAa-----GGUCUGG----CGGGUG-UGG- -5'
27418 5' -56.7 NC_005869.1 + 26866 0.7 0.306648
Target:  5'- aGCCGCggCggCCAGGaCGCCCucaaaaucaggaaccGCACCc -3'
miRNA:   3'- -CGGCGuaGaaGGUCUgGCGGG---------------UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 16774 0.68 0.378819
Target:  5'- aGCCucccCGUCU-CCAucauGCCGCCCAcCGCCa -3'
miRNA:   3'- -CGGc---GUAGAaGGUc---UGGCGGGU-GUGG- -5'
27418 5' -56.7 NC_005869.1 + 17537 0.68 0.368977
Target:  5'- cGCCGCcgUaccCCGGuggcgguggcagcGCCGCCCGC-CCg -3'
miRNA:   3'- -CGGCGuaGaa-GGUC-------------UGGCGGGUGuGG- -5'
27418 5' -56.7 NC_005869.1 + 13312 0.69 0.361056
Target:  5'- cGCCGCcg---CCGGccGCCGCcgCCGCGCCu -3'
miRNA:   3'- -CGGCGuagaaGGUC--UGGCG--GGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 27614 0.69 0.344727
Target:  5'- uCCGCgaguucgugcccacgGUCUacaucaaccccuucUCCGGACCGCCCGgGaCCu -3'
miRNA:   3'- cGGCG---------------UAGA--------------AGGUCUGGCGGGUgU-GG- -5'
27418 5' -56.7 NC_005869.1 + 24628 0.7 0.311325
Target:  5'- uGCCGCg----CCA-ACCGCCCACgaGCCg -3'
miRNA:   3'- -CGGCGuagaaGGUcUGGCGGGUG--UGG- -5'
27418 5' -56.7 NC_005869.1 + 27365 0.67 0.465616
Target:  5'- aCCGCGc---CCuGGCCGCCCGcCGCUg -3'
miRNA:   3'- cGGCGUagaaGGuCUGGCGGGU-GUGG- -5'
27418 5' -56.7 NC_005869.1 + 29321 0.67 0.465616
Target:  5'- cCCuaAUCccCCAGACCGCCacccuCAUGCCa -3'
miRNA:   3'- cGGcgUAGaaGGUCUGGCGG-----GUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 22822 0.67 0.475893
Target:  5'- aGCCaGCggCUcUCGGGCgCGCCCAgGCUc -3'
miRNA:   3'- -CGG-CGuaGAaGGUCUG-GCGGGUgUGG- -5'
27418 5' -56.7 NC_005869.1 + 27167 0.67 0.475893
Target:  5'- cGCCGCAccUCggCCGaACCuCCuCGCGCCc -3'
miRNA:   3'- -CGGCGU--AGaaGGUcUGGcGG-GUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 18045 0.66 0.486282
Target:  5'- cGCCGCcccgUCCAGcggcGCCuggggcgcguGCCCAgCACCa -3'
miRNA:   3'- -CGGCGuagaAGGUC----UGG----------CGGGU-GUGG- -5'
27418 5' -56.7 NC_005869.1 + 23321 0.66 0.486282
Target:  5'- gGCCGCcgCgcCCGacaGCCGCgCCAgGCCc -3'
miRNA:   3'- -CGGCGuaGaaGGUc--UGGCG-GGUgUGG- -5'
27418 5' -56.7 NC_005869.1 + 23613 0.66 0.496778
Target:  5'- cCCGguUCUUUuugaCAGAgCGCCCucgacuGCGCCc -3'
miRNA:   3'- cGGCguAGAAG----GUCUgGCGGG------UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 29602 0.66 0.501004
Target:  5'- cGCCGCGaccagagcggcaacaUCUccaaccucaagaUCCAGGCCaaguaCCACAUCa -3'
miRNA:   3'- -CGGCGU---------------AGA------------AGGUCUGGcg---GGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 30333 0.66 0.528845
Target:  5'- gGCCGCc---UCCgAGGCCgugGCCCGCAgCu -3'
miRNA:   3'- -CGGCGuagaAGG-UCUGG---CGGGUGUgG- -5'
27418 5' -56.7 NC_005869.1 + 16601 0.66 0.528845
Target:  5'- cGCCGCGggcgCCGGGCCaCCgGaacCACCg -3'
miRNA:   3'- -CGGCGUagaaGGUCUGGcGGgU---GUGG- -5'
27418 5' -56.7 NC_005869.1 + 25926 1.01 0.001629
Target:  5'- gGCCGCAUCUUCCAGACCGCCCaaccugcuccguGCGCCg -3'
miRNA:   3'- -CGGCGUAGAAGGUCUGGCGGG------------UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.