Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27418 | 5' | -56.7 | NC_005869.1 | + | 24628 | 0.7 | 0.311325 |
Target: 5'- uGCCGCg----CCA-ACCGCCCACgaGCCg -3' miRNA: 3'- -CGGCGuagaaGGUcUGGCGGGUG--UGG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 18562 | 0.69 | 0.327304 |
Target: 5'- cGCCGCGcgCggcggcgCCGGgcuACCGCCUcCACCg -3' miRNA: 3'- -CGGCGUa-Gaa-----GGUC---UGGCGGGuGUGG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 27614 | 0.69 | 0.344727 |
Target: 5'- uCCGCgaguucgugcccacgGUCUacaucaaccccuucUCCGGACCGCCCGgGaCCu -3' miRNA: 3'- cGGCG---------------UAGA--------------AGGUCUGGCGGGUgU-GG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 25178 | 0.69 | 0.352395 |
Target: 5'- aCCGCAUCaccgucgaCCuGGCCGCCaccguggagCGCGCCg -3' miRNA: 3'- cGGCGUAGaa------GGuCUGGCGG---------GUGUGG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 13312 | 0.69 | 0.361056 |
Target: 5'- cGCCGCcg---CCGGccGCCGCcgCCGCGCCu -3' miRNA: 3'- -CGGCGuagaaGGUC--UGGCG--GGUGUGG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 17537 | 0.68 | 0.368977 |
Target: 5'- cGCCGCcgUaccCCGGuggcgguggcagcGCCGCCCGC-CCg -3' miRNA: 3'- -CGGCGuaGaa-GGUC-------------UGGCGGGUGuGG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 16774 | 0.68 | 0.378819 |
Target: 5'- aGCCucccCGUCU-CCAucauGCCGCCCAcCGCCa -3' miRNA: 3'- -CGGc---GUAGAaGGUc---UGGCGGGU-GUGG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 30066 | 0.68 | 0.387917 |
Target: 5'- uCCGCGUCaguugUCCuccgcgcauGGACCGCUCcucuugcucGCGCCg -3' miRNA: 3'- cGGCGUAGa----AGG---------UCUGGCGGG---------UGUGG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 16550 | 0.68 | 0.406539 |
Target: 5'- aGCCGCccgC-UCCAG-Ca-CCCACGCCg -3' miRNA: 3'- -CGGCGua-GaAGGUCuGgcGGGUGUGG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 26435 | 0.68 | 0.406539 |
Target: 5'- cGCCGCcgCcugCgCGGGCCGCCC-CucuuCCu -3' miRNA: 3'- -CGGCGuaGaa-G-GUCUGGCGGGuGu---GG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 30397 | 0.68 | 0.406539 |
Target: 5'- uGCCGCAgcUCcgCCAGcgccuGCCGCaUCAUGCCc -3' miRNA: 3'- -CGGCGU--AGaaGGUC-----UGGCG-GGUGUGG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 33831 | 0.68 | 0.406539 |
Target: 5'- cGCCGC-UCggCCccgccccgcggaGGACCGCCCcagggcucCACCc -3' miRNA: 3'- -CGGCGuAGaaGG------------UCUGGCGGGu-------GUGG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 22022 | 0.68 | 0.416059 |
Target: 5'- uGCUGCGccaUCgucaaCAcGGCCGCCCgccACACCg -3' miRNA: 3'- -CGGCGU---AGaag--GU-CUGGCGGG---UGUGG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 26954 | 0.67 | 0.425713 |
Target: 5'- -aCGaCAUCgUCCAGGCCaCCCuGCGCUa -3' miRNA: 3'- cgGC-GUAGaAGGUCUGGcGGG-UGUGG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 16945 | 0.67 | 0.425713 |
Target: 5'- cGCCuGCAggaCUU--GGGCUGCCCGCGCa -3' miRNA: 3'- -CGG-CGUa--GAAggUCUGGCGGGUGUGg -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 18663 | 0.67 | 0.425713 |
Target: 5'- aGCUGCGUCccgagaCCAaACUGCCCGCcgugGCCc -3' miRNA: 3'- -CGGCGUAGaa----GGUcUGGCGGGUG----UGG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 15631 | 0.67 | 0.4355 |
Target: 5'- cGCCGCAgccgCCGccuCCGCaaaCGCACCu -3' miRNA: 3'- -CGGCGUagaaGGUcu-GGCGg--GUGUGG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 15242 | 0.67 | 0.4355 |
Target: 5'- aGCCGCGg---CCGGAgCCGCggCCggACGCCg -3' miRNA: 3'- -CGGCGUagaaGGUCU-GGCG--GG--UGUGG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 24503 | 0.67 | 0.4355 |
Target: 5'- cGCUGCAUCa-UCAGugCGCUCA-GCCu -3' miRNA: 3'- -CGGCGUAGaaGGUCugGCGGGUgUGG- -5' |
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27418 | 5' | -56.7 | NC_005869.1 | + | 18334 | 0.67 | 0.445415 |
Target: 5'- -aCGUggCcaaCCAGGCCGucuCCCACGCCg -3' miRNA: 3'- cgGCGuaGaa-GGUCUGGC---GGGUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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