miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27418 5' -56.7 NC_005869.1 + 33831 0.68 0.406539
Target:  5'- cGCCGC-UCggCCccgccccgcggaGGACCGCCCcagggcucCACCc -3'
miRNA:   3'- -CGGCGuAGaaGG------------UCUGGCGGGu-------GUGG- -5'
27418 5' -56.7 NC_005869.1 + 32361 0.71 0.260098
Target:  5'- gGCaUGCAgaaacUCUUCCguucgaGGACCGCCCACGgUa -3'
miRNA:   3'- -CG-GCGU-----AGAAGG------UCUGGCGGGUGUgG- -5'
27418 5' -56.7 NC_005869.1 + 31439 0.66 0.486282
Target:  5'- cGCCGCcagcuUCagCCAGuGCCGCaaGCGCUg -3'
miRNA:   3'- -CGGCGu----AGaaGGUC-UGGCGggUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 30397 0.68 0.406539
Target:  5'- uGCCGCAgcUCcgCCAGcgccuGCCGCaUCAUGCCc -3'
miRNA:   3'- -CGGCGU--AGaaGGUC-----UGGCG-GGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 30333 0.66 0.528845
Target:  5'- gGCCGCc---UCCgAGGCCgugGCCCGCAgCu -3'
miRNA:   3'- -CGGCGuagaAGG-UCUGG---CGGGUGUgG- -5'
27418 5' -56.7 NC_005869.1 + 30066 0.68 0.387917
Target:  5'- uCCGCGUCaguugUCCuccgcgcauGGACCGCUCcucuugcucGCGCCg -3'
miRNA:   3'- cGGCGUAGa----AGG---------UCUGGCGGG---------UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 29602 0.66 0.501004
Target:  5'- cGCCGCGaccagagcggcaacaUCUccaaccucaagaUCCAGGCCaaguaCCACAUCa -3'
miRNA:   3'- -CGGCGU---------------AGA------------AGGUCUGGcg---GGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 29321 0.67 0.465616
Target:  5'- cCCuaAUCccCCAGACCGCCacccuCAUGCCa -3'
miRNA:   3'- cGGcgUAGaaGGUCUGGCGG-----GUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 28697 0.72 0.215958
Target:  5'- gGCCaccgaGCAgcc-CCAGACCGCCCccuuCACCg -3'
miRNA:   3'- -CGG-----CGUagaaGGUCUGGCGGGu---GUGG- -5'
27418 5' -56.7 NC_005869.1 + 28603 0.66 0.496778
Target:  5'- cCCGCcgCUgCC--ACCGCCCcuCACCu -3'
miRNA:   3'- cGGCGuaGAaGGucUGGCGGGu-GUGG- -5'
27418 5' -56.7 NC_005869.1 + 27811 0.7 0.30356
Target:  5'- uUCGCcag--CCAGAUggaCGCCCGCACCa -3'
miRNA:   3'- cGGCGuagaaGGUCUG---GCGGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 27614 0.69 0.344727
Target:  5'- uCCGCgaguucgugcccacgGUCUacaucaaccccuucUCCGGACCGCCCGgGaCCu -3'
miRNA:   3'- cGGCG---------------UAGA--------------AGGUCUGGCGGGUgU-GG- -5'
27418 5' -56.7 NC_005869.1 + 27488 0.67 0.454445
Target:  5'- gGCCggacgGCAUCUUCCAGcucggaggcggagGCCGCuccuccuucaaCCcCACCg -3'
miRNA:   3'- -CGG-----CGUAGAAGGUC-------------UGGCG-----------GGuGUGG- -5'
27418 5' -56.7 NC_005869.1 + 27365 0.67 0.465616
Target:  5'- aCCGCGc---CCuGGCCGCCCGcCGCUg -3'
miRNA:   3'- cGGCGUagaaGGuCUGGCGGGU-GUGG- -5'
27418 5' -56.7 NC_005869.1 + 27167 0.67 0.475893
Target:  5'- cGCCGCAccUCggCCGaACCuCCuCGCGCCc -3'
miRNA:   3'- -CGGCGU--AGaaGGUcUGGcGG-GUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 27075 0.74 0.156534
Target:  5'- cGCCGCcuucaauGUCUUCCAGAggcccaccaucagcuCCaacuCCCACGCCa -3'
miRNA:   3'- -CGGCG-------UAGAAGGUCU---------------GGc---GGGUGUGG- -5'
27418 5' -56.7 NC_005869.1 + 26954 0.67 0.425713
Target:  5'- -aCGaCAUCgUCCAGGCCaCCCuGCGCUa -3'
miRNA:   3'- cgGC-GUAGaAGGUCUGGcGGG-UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 26866 0.7 0.306648
Target:  5'- aGCCGCggCggCCAGGaCGCCCucaaaaucaggaaccGCACCc -3'
miRNA:   3'- -CGGCGuaGaaGGUCUgGCGGG---------------UGUGG- -5'
27418 5' -56.7 NC_005869.1 + 26435 0.68 0.406539
Target:  5'- cGCCGCcgCcugCgCGGGCCGCCC-CucuuCCu -3'
miRNA:   3'- -CGGCGuaGaa-G-GUCUGGCGGGuGu---GG- -5'
27418 5' -56.7 NC_005869.1 + 26173 0.71 0.244834
Target:  5'- cGCCGCG-CUgcaggugguggccgUCCAGAgcCCGCCUGCAgCg -3'
miRNA:   3'- -CGGCGUaGA--------------AGGUCU--GGCGGGUGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.