miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27419 3' -68.7 NC_005869.1 + 2052 0.68 0.076218
Target:  5'- cGGUgggGGCCgUGCGCaacaGCCGGGCCgCGg -3'
miRNA:   3'- cUCGa--CCGG-GCGCGg---CGGCCCGG-GUg -5'
27419 3' -68.7 NC_005869.1 + 11035 0.68 0.07212
Target:  5'- gGGGCUGccGCCagGUGCCccuGCUGGGCCgGCa -3'
miRNA:   3'- -CUCGAC--CGGg-CGCGG---CGGCCCGGgUG- -5'
27419 3' -68.7 NC_005869.1 + 24914 0.68 0.07212
Target:  5'- -uGCUGGU--GCGCCGCgCGaGCCCACu -3'
miRNA:   3'- cuCGACCGggCGCGGCG-GCcCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 18453 0.69 0.06278
Target:  5'- gGAGC--GCCUGCgccGCCGCCGGGUgcuCCGCc -3'
miRNA:   3'- -CUCGacCGGGCG---CGGCGGCCCG---GGUG- -5'
27419 3' -68.7 NC_005869.1 + 29427 0.69 0.057749
Target:  5'- -----cGCCCGCGCCGCC--GCCCGCg -3'
miRNA:   3'- cucgacCGGGCGCGGCGGccCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 22178 0.69 0.056161
Target:  5'- gGGGCUGGCUCGCGaagCGCCGaGaCCCGu -3'
miRNA:   3'- -CUCGACCGGGCGCg--GCGGCcC-GGGUg -5'
27419 3' -68.7 NC_005869.1 + 25473 0.7 0.05022
Target:  5'- cGAGCUcaacGcGCCCGUGCC-CCuGGCCCAg -3'
miRNA:   3'- -CUCGA----C-CGGGCGCGGcGGcCCGGGUg -5'
27419 3' -68.7 NC_005869.1 + 10953 0.7 0.047484
Target:  5'- cGGCgcgGGCCCacaugagcGCgGCCGCCuGGCCCAg -3'
miRNA:   3'- cUCGa--CCGGG--------CG-CGGCGGcCCGGGUg -5'
27419 3' -68.7 NC_005869.1 + 5487 0.71 0.04365
Target:  5'- gGAGCUuGCCgGgGCCG-CGGuGCCCGCa -3'
miRNA:   3'- -CUCGAcCGGgCgCGGCgGCC-CGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 16611 0.71 0.037922
Target:  5'- --uCUGGCuCCGCGCCgGgCGGGCCgGCc -3'
miRNA:   3'- cucGACCG-GGCGCGG-CgGCCCGGgUG- -5'
27419 3' -68.7 NC_005869.1 + 7603 0.71 0.037922
Target:  5'- gGGGC-GGCCCGCGCagGCgGcGGCgCCGCa -3'
miRNA:   3'- -CUCGaCCGGGCGCGg-CGgC-CCG-GGUG- -5'
27419 3' -68.7 NC_005869.1 + 23079 0.72 0.035843
Target:  5'- aGGCUGG-CCGCGCUcaugUGGGCCCGCg -3'
miRNA:   3'- cUCGACCgGGCGCGGcg--GCCCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 18661 0.73 0.029411
Target:  5'- gGAGCUGcGUCCcgagaccaaacuGC-CCGCCGuGGCCCACa -3'
miRNA:   3'- -CUCGAC-CGGG------------CGcGGCGGC-CCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 24954 0.75 0.018676
Target:  5'- cGAGCUGaCCCuGCGCCGCUGGGUCauaaACu -3'
miRNA:   3'- -CUCGACcGGG-CGCGGCGGCCCGGg---UG- -5'
27419 3' -68.7 NC_005869.1 + 17862 0.8 0.006492
Target:  5'- gGGGCgGGCCCGCcgcuGCCGCCGGGCUCu- -3'
miRNA:   3'- -CUCGaCCGGGCG----CGGCGGCCCGGGug -5'
27419 3' -68.7 NC_005869.1 + 25730 1.06 0.000038
Target:  5'- gGAGCUGGCCCGCGCCGCCGGGCCCACc -3'
miRNA:   3'- -CUCGACCGGGCGCGGCGGCCCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.