miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27419 3' -68.7 NC_005869.1 + 18661 0.73 0.029411
Target:  5'- gGAGCUGcGUCCcgagaccaaacuGC-CCGCCGuGGCCCACa -3'
miRNA:   3'- -CUCGAC-CGGG------------CGcGGCGGC-CCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 20625 0.66 0.105875
Target:  5'- aAGCUGGCCaCGgGCagGCCcaucuccuGGGCgCGCg -3'
miRNA:   3'- cUCGACCGG-GCgCGg-CGG--------CCCGgGUG- -5'
27419 3' -68.7 NC_005869.1 + 22178 0.69 0.056161
Target:  5'- gGGGCUGGCUCGCGaagCGCCGaGaCCCGu -3'
miRNA:   3'- -CUCGACCGGGCGCg--GCGGCcC-GGGUg -5'
27419 3' -68.7 NC_005869.1 + 22568 0.66 0.100271
Target:  5'- uGAGCuccuugucauUGaGCUCGCGCCGCCGcgaGGUgcugaCCACg -3'
miRNA:   3'- -CUCG----------AC-CGGGCGCGGCGGC---CCG-----GGUG- -5'
27419 3' -68.7 NC_005869.1 + 23079 0.72 0.035843
Target:  5'- aGGCUGG-CCGCGCUcaugUGGGCCCGCg -3'
miRNA:   3'- cUCGACCgGGCGCGGcg--GCCCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 23293 0.67 0.090882
Target:  5'- uGAGCUGcaCCCGUgggugccgcucggggGCCGCCGcGCCCGa -3'
miRNA:   3'- -CUCGACc-GGGCG---------------CGGCGGCcCGGGUg -5'
27419 3' -68.7 NC_005869.1 + 24398 0.66 0.101369
Target:  5'- -uGCUGGCuaGaCGCCuucgucgaacgcuucGCCGGGUCCGa -3'
miRNA:   3'- cuCGACCGggC-GCGG---------------CGGCCCGGGUg -5'
27419 3' -68.7 NC_005869.1 + 24653 0.67 0.084859
Target:  5'- cGGCUGcccuugcGCCgGCGCCGUCcccGGCCUGCg -3'
miRNA:   3'- cUCGAC-------CGGgCGCGGCGGc--CCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 24914 0.68 0.07212
Target:  5'- -uGCUGGU--GCGCCGCgCGaGCCCACu -3'
miRNA:   3'- cuCGACCGggCGCGGCG-GCcCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 24954 0.75 0.018676
Target:  5'- cGAGCUGaCCCuGCGCCGCUGGGUCauaaACu -3'
miRNA:   3'- -CUCGACcGGG-CGCGGCGGCCCGGg---UG- -5'
27419 3' -68.7 NC_005869.1 + 25473 0.7 0.05022
Target:  5'- cGAGCUcaacGcGCCCGUGCC-CCuGGCCCAg -3'
miRNA:   3'- -CUCGA----C-CGGGCGCGGcGGcCCGGGUg -5'
27419 3' -68.7 NC_005869.1 + 25501 0.67 0.09599
Target:  5'- nAGCU-GCCCGCcugagaccggccgccGCCGCCGaGGCCgCGg -3'
miRNA:   3'- cUCGAcCGGGCG---------------CGGCGGC-CCGG-GUg -5'
27419 3' -68.7 NC_005869.1 + 25637 0.66 0.100271
Target:  5'- cGAGU--GCCCGcCGCCccuCUGGGCUCACu -3'
miRNA:   3'- -CUCGacCGGGC-GCGGc--GGCCCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 25730 1.06 0.000038
Target:  5'- gGAGCUGGCCCGCGCCGCCGGGCCCACc -3'
miRNA:   3'- -CUCGACCGGGCGCGGCGGCCCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 25803 0.68 0.076218
Target:  5'- -cGCUGGgacccCCCGC-CCGa-GGGCCCGCc -3'
miRNA:   3'- cuCGACC-----GGGCGcGGCggCCCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 29427 0.69 0.057749
Target:  5'- -----cGCCCGCGCCGCC--GCCCGCg -3'
miRNA:   3'- cucgacCGGGCGCGGCGGccCGGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.