Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 2052 | 0.68 | 0.076218 |
Target: 5'- cGGUgggGGCCgUGCGCaacaGCCGGGCCgCGg -3' miRNA: 3'- cUCGa--CCGG-GCGCGg---CGGCCCGG-GUg -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 5268 | 0.66 | 0.100271 |
Target: 5'- cGAGCggguggagGGUCCgguccuuccaGgGCCGgaGGGCCCGCg -3' miRNA: 3'- -CUCGa-------CCGGG----------CgCGGCggCCCGGGUG- -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 5487 | 0.71 | 0.04365 |
Target: 5'- gGAGCUuGCCgGgGCCG-CGGuGCCCGCa -3' miRNA: 3'- -CUCGAcCGGgCgCGGCgGCC-CGGGUG- -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 7252 | 0.67 | 0.092134 |
Target: 5'- uGGGCUGGuUCUGCuGCCGCCGcugcugcGGCCUu- -3' miRNA: 3'- -CUCGACC-GGGCG-CGGCGGC-------CCGGGug -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 7603 | 0.71 | 0.037922 |
Target: 5'- gGGGC-GGCCCGCGCagGCgGcGGCgCCGCa -3' miRNA: 3'- -CUCGaCCGGGCGCGg-CGgC-CCG-GGUG- -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 7749 | 0.67 | 0.094688 |
Target: 5'- aGGCgGGCCUGCagggcguGCCGCaGGGCCUu- -3' miRNA: 3'- cUCGaCCGGGCG-------CGGCGgCCCGGGug -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 8304 | 0.66 | 0.114836 |
Target: 5'- aGGUgGGCCCG-GCgGCgCGGGCCaGCu -3' miRNA: 3'- cUCGaCCGGGCgCGgCG-GCCCGGgUG- -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 9122 | 0.66 | 0.105875 |
Target: 5'- gGAGUgGGCUCGCGCgGCgcaccagcaGGGUCUGCa -3' miRNA: 3'- -CUCGaCCGGGCGCGgCGg--------CCCGGGUG- -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 10626 | 0.66 | 0.108786 |
Target: 5'- -cGCcGGCCgGCGCC-CUGGGCgCGg -3' miRNA: 3'- cuCGaCCGGgCGCGGcGGCCCGgGUg -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 10710 | 0.66 | 0.108786 |
Target: 5'- aGGGcCUGGCgCG-GCUGUCGGGCgCgGCg -3' miRNA: 3'- -CUC-GACCGgGCgCGGCGGCCCG-GgUG- -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 10953 | 0.7 | 0.047484 |
Target: 5'- cGGCgcgGGCCCacaugagcGCgGCCGCCuGGCCCAg -3' miRNA: 3'- cUCGa--CCGGG--------CG-CGGCGGcCCGGGUg -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 11035 | 0.68 | 0.07212 |
Target: 5'- gGGGCUGccGCCagGUGCCccuGCUGGGCCgGCa -3' miRNA: 3'- -CUCGAC--CGGg-CGCGG---CGGCCCGGgUG- -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 13214 | 0.67 | 0.079876 |
Target: 5'- -cGCUggGGCUCGCGCCGCuccagccuggccagCGGcGCCgACa -3' miRNA: 3'- cuCGA--CCGGGCGCGGCG--------------GCC-CGGgUG- -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 15373 | 0.66 | 0.104163 |
Target: 5'- -cGCc-GCCgGCGCCGCCaucgucgacgucggaGGGCCgCGCg -3' miRNA: 3'- cuCGacCGGgCGCGGCGG---------------CCCGG-GUG- -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 15977 | 0.66 | 0.097575 |
Target: 5'- -uGCUGGgCaCGCGCC-CCaGGCgCCGCu -3' miRNA: 3'- cuCGACCgG-GCGCGGcGGcCCG-GGUG- -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 16611 | 0.71 | 0.037922 |
Target: 5'- --uCUGGCuCCGCGCCgGgCGGGCCgGCc -3' miRNA: 3'- cucGACCG-GGCGCGG-CgGCCCGGgUG- -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 17553 | 0.67 | 0.094947 |
Target: 5'- uGGCggUGGCa-GCGCCGCCc-GCCCGCa -3' miRNA: 3'- cUCG--ACCGggCGCGGCGGccCGGGUG- -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 17862 | 0.8 | 0.006492 |
Target: 5'- gGGGCgGGCCCGCcgcuGCCGCCGGGCUCu- -3' miRNA: 3'- -CUCGaCCGGGCG----CGGCGGCCCGGGug -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 18012 | 0.68 | 0.076218 |
Target: 5'- aGGCUGGCaCCGgGCgGUaggUGGGCgCGCa -3' miRNA: 3'- cUCGACCG-GGCgCGgCG---GCCCGgGUG- -5' |
|||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 18453 | 0.69 | 0.06278 |
Target: 5'- gGAGC--GCCUGCgccGCCGCCGGGUgcuCCGCc -3' miRNA: 3'- -CUCGacCGGGCG---CGGCGGCCCG---GGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home