miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27419 3' -68.7 NC_005869.1 + 18661 0.73 0.029411
Target:  5'- gGAGCUGcGUCCcgagaccaaacuGC-CCGCCGuGGCCCACa -3'
miRNA:   3'- -CUCGAC-CGGG------------CGcGGCGGC-CCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 8304 0.66 0.114836
Target:  5'- aGGUgGGCCCG-GCgGCgCGGGCCaGCu -3'
miRNA:   3'- cUCGaCCGGGCgCGgCG-GCCCGGgUG- -5'
27419 3' -68.7 NC_005869.1 + 10626 0.66 0.108786
Target:  5'- -cGCcGGCCgGCGCC-CUGGGCgCGg -3'
miRNA:   3'- cuCGaCCGGgCGCGGcGGCCCGgGUg -5'
27419 3' -68.7 NC_005869.1 + 10710 0.66 0.108786
Target:  5'- aGGGcCUGGCgCG-GCUGUCGGGCgCgGCg -3'
miRNA:   3'- -CUC-GACCGgGCgCGGCGGCCCG-GgUG- -5'
27419 3' -68.7 NC_005869.1 + 15373 0.66 0.104163
Target:  5'- -cGCc-GCCgGCGCCGCCaucgucgacgucggaGGGCCgCGCg -3'
miRNA:   3'- cuCGacCGGgCGCGGCGG---------------CCCGG-GUG- -5'
27419 3' -68.7 NC_005869.1 + 25637 0.66 0.100271
Target:  5'- cGAGU--GCCCGcCGCCccuCUGGGCUCACu -3'
miRNA:   3'- -CUCGacCGGGC-GCGGc--GGCCCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 5268 0.66 0.100271
Target:  5'- cGAGCggguggagGGUCCgguccuuccaGgGCCGgaGGGCCCGCg -3'
miRNA:   3'- -CUCGa-------CCGGG----------CgCGGCggCCCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 15977 0.66 0.097575
Target:  5'- -uGCUGGgCaCGCGCC-CCaGGCgCCGCu -3'
miRNA:   3'- cuCGACCgG-GCGCGGcGGcCCG-GGUG- -5'
27419 3' -68.7 NC_005869.1 + 17553 0.67 0.094947
Target:  5'- uGGCggUGGCa-GCGCCGCCc-GCCCGCa -3'
miRNA:   3'- cUCG--ACCGggCGCGGCGGccCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 7749 0.67 0.094688
Target:  5'- aGGCgGGCCUGCagggcguGCCGCaGGGCCUu- -3'
miRNA:   3'- cUCGaCCGGGCG-------CGGCGgCCCGGGug -5'
27419 3' -68.7 NC_005869.1 + 16611 0.71 0.037922
Target:  5'- --uCUGGCuCCGCGCCgGgCGGGCCgGCc -3'
miRNA:   3'- cucGACCG-GGCGCGG-CgGCCCGGgUG- -5'
27419 3' -68.7 NC_005869.1 + 7603 0.71 0.037922
Target:  5'- gGGGC-GGCCCGCGCagGCgGcGGCgCCGCa -3'
miRNA:   3'- -CUCGaCCGGGCGCGg-CGgC-CCG-GGUG- -5'
27419 3' -68.7 NC_005869.1 + 5487 0.71 0.04365
Target:  5'- gGAGCUuGCCgGgGCCG-CGGuGCCCGCa -3'
miRNA:   3'- -CUCGAcCGGgCgCGGCgGCC-CGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 10953 0.7 0.047484
Target:  5'- cGGCgcgGGCCCacaugagcGCgGCCGCCuGGCCCAg -3'
miRNA:   3'- cUCGa--CCGGG--------CG-CGGCGGcCCGGGUg -5'
27419 3' -68.7 NC_005869.1 + 24914 0.68 0.07212
Target:  5'- -uGCUGGU--GCGCCGCgCGaGCCCACu -3'
miRNA:   3'- cuCGACCGggCGCGGCG-GCcCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 13214 0.67 0.079876
Target:  5'- -cGCUggGGCUCGCGCCGCuccagccuggccagCGGcGCCgACa -3'
miRNA:   3'- cuCGA--CCGGGCGCGGCG--------------GCC-CGGgUG- -5'
27419 3' -68.7 NC_005869.1 + 25730 1.06 0.000038
Target:  5'- gGAGCUGGCCCGCGCCGCCGGGCCCACc -3'
miRNA:   3'- -CUCGACCGGGCGCGGCGGCCCGGGUG- -5'
27419 3' -68.7 NC_005869.1 + 20625 0.66 0.105875
Target:  5'- aAGCUGGCCaCGgGCagGCCcaucuccuGGGCgCGCg -3'
miRNA:   3'- cUCGACCGG-GCgCGg-CGG--------CCCGgGUG- -5'
27419 3' -68.7 NC_005869.1 + 24398 0.66 0.101369
Target:  5'- -uGCUGGCuaGaCGCCuucgucgaacgcuucGCCGGGUCCGa -3'
miRNA:   3'- cuCGACCGggC-GCGG---------------CGGCCCGGGUg -5'
27419 3' -68.7 NC_005869.1 + 22568 0.66 0.100271
Target:  5'- uGAGCuccuugucauUGaGCUCGCGCCGCCGcgaGGUgcugaCCACg -3'
miRNA:   3'- -CUCG----------AC-CGGGCGCGGCGGC---CCG-----GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.