Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27419 | 3' | -68.7 | NC_005869.1 | + | 7252 | 0.67 | 0.092134 |
Target: 5'- uGGGCUGGuUCUGCuGCCGCCGcugcugcGGCCUu- -3' miRNA: 3'- -CUCGACC-GGGCG-CGGCGGC-------CCGGGug -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 23079 | 0.72 | 0.035843 |
Target: 5'- aGGCUGG-CCGCGCUcaugUGGGCCCGCg -3' miRNA: 3'- cUCGACCgGGCGCGGcg--GCCCGGGUG- -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 17862 | 0.8 | 0.006492 |
Target: 5'- gGGGCgGGCCCGCcgcuGCCGCCGGGCUCu- -3' miRNA: 3'- -CUCGaCCGGGCG----CGGCGGCCCGGGug -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 25730 | 1.06 | 0.000038 |
Target: 5'- gGAGCUGGCCCGCGCCGCCGGGCCCACc -3' miRNA: 3'- -CUCGACCGGGCGCGGCGGCCCGGGUG- -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 2052 | 0.68 | 0.076218 |
Target: 5'- cGGUgggGGCCgUGCGCaacaGCCGGGCCgCGg -3' miRNA: 3'- cUCGa--CCGG-GCGCGg---CGGCCCGG-GUg -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 9122 | 0.66 | 0.105875 |
Target: 5'- gGAGUgGGCUCGCGCgGCgcaccagcaGGGUCUGCa -3' miRNA: 3'- -CUCGaCCGGGCGCGgCGg--------CCCGGGUG- -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 20625 | 0.66 | 0.105875 |
Target: 5'- aAGCUGGCCaCGgGCagGCCcaucuccuGGGCgCGCg -3' miRNA: 3'- cUCGACCGG-GCgCGg-CGG--------CCCGgGUG- -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 24398 | 0.66 | 0.101369 |
Target: 5'- -uGCUGGCuaGaCGCCuucgucgaacgcuucGCCGGGUCCGa -3' miRNA: 3'- cuCGACCGggC-GCGG---------------CGGCCCGGGUg -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 22568 | 0.66 | 0.100271 |
Target: 5'- uGAGCuccuugucauUGaGCUCGCGCCGCCGcgaGGUgcugaCCACg -3' miRNA: 3'- -CUCG----------AC-CGGGCGCGGCGGC---CCG-----GGUG- -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 29427 | 0.69 | 0.057749 |
Target: 5'- -----cGCCCGCGCCGCC--GCCCGCg -3' miRNA: 3'- cucgacCGGGCGCGGCGGccCGGGUG- -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 18453 | 0.69 | 0.06278 |
Target: 5'- gGAGC--GCCUGCgccGCCGCCGGGUgcuCCGCc -3' miRNA: 3'- -CUCGacCGGGCG---CGGCGGCCCG---GGUG- -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 23293 | 0.67 | 0.090882 |
Target: 5'- uGAGCUGcaCCCGUgggugccgcucggggGCCGCCGcGCCCGa -3' miRNA: 3'- -CUCGACc-GGGCG---------------CGGCGGCcCGGGUg -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 22178 | 0.69 | 0.056161 |
Target: 5'- gGGGCUGGCUCGCGaagCGCCGaGaCCCGu -3' miRNA: 3'- -CUCGACCGGGCGCg--GCGGCcC-GGGUg -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 24653 | 0.67 | 0.084859 |
Target: 5'- cGGCUGcccuugcGCCgGCGCCGUCcccGGCCUGCg -3' miRNA: 3'- cUCGAC-------CGGgCGCGGCGGc--CCGGGUG- -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 11035 | 0.68 | 0.07212 |
Target: 5'- gGGGCUGccGCCagGUGCCccuGCUGGGCCgGCa -3' miRNA: 3'- -CUCGAC--CGGg-CGCGG---CGGCCCGGgUG- -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 25473 | 0.7 | 0.05022 |
Target: 5'- cGAGCUcaacGcGCCCGUGCC-CCuGGCCCAg -3' miRNA: 3'- -CUCGA----C-CGGGCGCGGcGGcCCGGGUg -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 24954 | 0.75 | 0.018676 |
Target: 5'- cGAGCUGaCCCuGCGCCGCUGGGUCauaaACu -3' miRNA: 3'- -CUCGACcGGG-CGCGGCGGCCCGGg---UG- -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 25803 | 0.68 | 0.076218 |
Target: 5'- -cGCUGGgacccCCCGC-CCGa-GGGCCCGCc -3' miRNA: 3'- cuCGACC-----GGGCGcGGCggCCCGGGUG- -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 18012 | 0.68 | 0.076218 |
Target: 5'- aGGCUGGCaCCGgGCgGUaggUGGGCgCGCa -3' miRNA: 3'- cUCGACCG-GGCgCGgCG---GCCCGgGUG- -5' |
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27419 | 3' | -68.7 | NC_005869.1 | + | 25501 | 0.67 | 0.09599 |
Target: 5'- nAGCU-GCCCGCcugagaccggccgccGCCGCCGaGGCCgCGg -3' miRNA: 3'- cUCGAcCGGGCG---------------CGGCGGC-CCGG-GUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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