Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27419 | 5' | -58.4 | NC_005869.1 | + | 25764 | 1.08 | 0.00026 |
Target: 5'- cAGGUGGUCACCCGCCAGCAACACCACc -3' miRNA: 3'- -UCCACCAGUGGGCGGUCGUUGUGGUG- -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 16537 | 0.77 | 0.070537 |
Target: 5'- gAGGUGGUgguggagcCGCCCGCucCAGCAcccACGCCGCc -3' miRNA: 3'- -UCCACCA--------GUGGGCG--GUCGU---UGUGGUG- -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 17096 | 0.75 | 0.091884 |
Target: 5'- cGGUGGUgGCCCGgagcaCgGGCAugGCCACc -3' miRNA: 3'- uCCACCAgUGGGC-----GgUCGUugUGGUG- -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 27802 | 0.74 | 0.108126 |
Target: 5'- aAGGUGGUC-UUCGCCAGCcagauggacgcccGCACCACc -3' miRNA: 3'- -UCCACCAGuGGGCGGUCGu------------UGUGGUG- -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 26183 | 0.74 | 0.109384 |
Target: 5'- cAGGUGGUggccguccagaGCCCGCCuGCAGCGCUg- -3' miRNA: 3'- -UCCACCAg----------UGGGCGGuCGUUGUGGug -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 21378 | 0.72 | 0.149379 |
Target: 5'- cGGcGGUCagggcauACgCCGCCGGCAGcCGCCGCu -3' miRNA: 3'- uCCaCCAG-------UG-GGCGGUCGUU-GUGGUG- -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 3766 | 0.72 | 0.154085 |
Target: 5'- gAGGUGG-CGCCCGgCgcuggAGCgAACACCAUg -3' miRNA: 3'- -UCCACCaGUGGGCgG-----UCG-UUGUGGUG- -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 8303 | 0.71 | 0.182185 |
Target: 5'- aAGGUGG--GCCCggcggcgcggGCCAGCucCACCGCg -3' miRNA: 3'- -UCCACCagUGGG----------CGGUCGuuGUGGUG- -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 18029 | 0.71 | 0.172347 |
Target: 5'- uAGGUGGgcgCGcacgcgccgcCCCGuCCAGCGGCGCCu- -3' miRNA: 3'- -UCCACCa--GU----------GGGC-GGUCGUUGUGGug -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 27373 | 0.71 | 0.187288 |
Target: 5'- --cUGGcCGCCCGCCgcuGGCAGgACCGCc -3' miRNA: 3'- uccACCaGUGGGCGG---UCGUUgUGGUG- -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 7601 | 0.71 | 0.187288 |
Target: 5'- gAGG-GGcgGCCCGCgcaggCGGCGGCGCCGCa -3' miRNA: 3'- -UCCaCCagUGGGCG-----GUCGUUGUGGUG- -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 14283 | 0.7 | 0.214726 |
Target: 5'- aAGcUGGUCauGCCCGgCAGCuACACCAa -3' miRNA: 3'- -UCcACCAG--UGGGCgGUCGuUGUGGUg -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 17556 | 0.7 | 0.208975 |
Target: 5'- cGGUGGcagcgcCGCCCGCCcGCAGCGgCGg -3' miRNA: 3'- uCCACCa-----GUGGGCGGuCGUUGUgGUg -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 16640 | 0.69 | 0.239097 |
Target: 5'- gGGGUGGggggCACcaccgCCGUCAGCcGCACCu- -3' miRNA: 3'- -UCCACCa---GUG-----GGCGGUCGuUGUGGug -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 26564 | 0.69 | 0.24554 |
Target: 5'- --cUGGUCACCCgcaccuucauGCCGcGCAACgGCCGCa -3' miRNA: 3'- uccACCAGUGGG----------CGGU-CGUUG-UGGUG- -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 13290 | 0.69 | 0.265737 |
Target: 5'- uAGGUguaGGUCGCCC-CCGGCAggaGCAgCAg -3' miRNA: 3'- -UCCA---CCAGUGGGcGGUCGU---UGUgGUg -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 23004 | 0.69 | 0.232795 |
Target: 5'- cAGG-GG-CACCUGgCGGCAGCcccaGCCGCa -3' miRNA: 3'- -UCCaCCaGUGGGCgGUCGUUG----UGGUG- -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 20079 | 0.69 | 0.252127 |
Target: 5'- cGGUGGUCgACCUGCaggaCAGgAAUACCGa -3' miRNA: 3'- uCCACCAG-UGGGCG----GUCgUUGUGGUg -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 15345 | 0.69 | 0.24489 |
Target: 5'- -cGUGGUCAacgcgaUCGCCGGCGccacccgccgccgGCGCCGCc -3' miRNA: 3'- ucCACCAGUg-----GGCGGUCGU-------------UGUGGUG- -5' |
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27419 | 5' | -58.4 | NC_005869.1 | + | 9902 | 0.69 | 0.239097 |
Target: 5'- cAGGUGGgugCGaccguagcCCCGCagggggcgCAGCAGCGCCAg -3' miRNA: 3'- -UCCACCa--GU--------GGGCG--------GUCGUUGUGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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