miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27419 5' -58.4 NC_005869.1 + 3766 0.72 0.154085
Target:  5'- gAGGUGG-CGCCCGgCgcuggAGCgAACACCAUg -3'
miRNA:   3'- -UCCACCaGUGGGCgG-----UCG-UUGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 7601 0.71 0.187288
Target:  5'- gAGG-GGcgGCCCGCgcaggCGGCGGCGCCGCa -3'
miRNA:   3'- -UCCaCCagUGGGCG-----GUCGUUGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 8303 0.71 0.182185
Target:  5'- aAGGUGG--GCCCggcggcgcggGCCAGCucCACCGCg -3'
miRNA:   3'- -UCCACCagUGGG----------CGGUCGuuGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 9902 0.69 0.239097
Target:  5'- cAGGUGGgugCGaccguagcCCCGCagggggcgCAGCAGCGCCAg -3'
miRNA:   3'- -UCCACCa--GU--------GGGCG--------GUCGUUGUGGUg -5'
27419 5' -58.4 NC_005869.1 + 12102 0.66 0.396128
Target:  5'- cAGGUGaUCGCCCagcGCgAGCGcucgaGCGCCAa -3'
miRNA:   3'- -UCCACcAGUGGG---CGgUCGU-----UGUGGUg -5'
27419 5' -58.4 NC_005869.1 + 13290 0.69 0.265737
Target:  5'- uAGGUguaGGUCGCCC-CCGGCAggaGCAgCAg -3'
miRNA:   3'- -UCCA---CCAGUGGGcGGUCGU---UGUgGUg -5'
27419 5' -58.4 NC_005869.1 + 13650 0.66 0.386864
Target:  5'- gAGGaGGauga-UGCCAGCAGCGCCGCc -3'
miRNA:   3'- -UCCaCCaguggGCGGUCGUUGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 14283 0.7 0.214726
Target:  5'- aAGcUGGUCauGCCCGgCAGCuACACCAa -3'
miRNA:   3'- -UCcACCAG--UGGGCgGUCGuUGUGGUg -5'
27419 5' -58.4 NC_005869.1 + 15059 0.67 0.333527
Target:  5'- gGGGUGGUgACCCcgaggguGCuCAGCAGCcgaACCu- -3'
miRNA:   3'- -UCCACCAgUGGG-------CG-GUCGUUG---UGGug -5'
27419 5' -58.4 NC_005869.1 + 15345 0.69 0.24489
Target:  5'- -cGUGGUCAacgcgaUCGCCGGCGccacccgccgccgGCGCCGCc -3'
miRNA:   3'- ucCACCAGUg-----GGCGGUCGU-------------UGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 15576 0.69 0.265737
Target:  5'- gAGGcGGagCACCCGgCGGCGGCGCagGCg -3'
miRNA:   3'- -UCCaCCa-GUGGGCgGUCGUUGUGg-UG- -5'
27419 5' -58.4 NC_005869.1 + 16537 0.77 0.070537
Target:  5'- gAGGUGGUgguggagcCGCCCGCucCAGCAcccACGCCGCc -3'
miRNA:   3'- -UCCACCA--------GUGGGCG--GUCGU---UGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 16640 0.69 0.239097
Target:  5'- gGGGUGGggggCACcaccgCCGUCAGCcGCACCu- -3'
miRNA:   3'- -UCCACCa---GUG-----GGCGGUCGuUGUGGug -5'
27419 5' -58.4 NC_005869.1 + 17096 0.75 0.091884
Target:  5'- cGGUGGUgGCCCGgagcaCgGGCAugGCCACc -3'
miRNA:   3'- uCCACCAgUGGGC-----GgUCGUugUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 17148 0.66 0.359068
Target:  5'- gGGGUGGgCACCgaGCCGGUGGugcagucCAUCACg -3'
miRNA:   3'- -UCCACCaGUGGg-CGGUCGUU-------GUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 17363 0.66 0.396128
Target:  5'- cGGcGGccgcCGCCCGCUc-CAGCGCCGCg -3'
miRNA:   3'- uCCaCCa---GUGGGCGGucGUUGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 17556 0.7 0.208975
Target:  5'- cGGUGGcagcgcCGCCCGCCcGCAGCGgCGg -3'
miRNA:   3'- uCCACCa-----GUGGGCGGuCGUUGUgGUg -5'
27419 5' -58.4 NC_005869.1 + 17883 0.68 0.272762
Target:  5'- gGGGUGG-CAuCCUGCCGGCGcuggugcccauCAUCGCg -3'
miRNA:   3'- -UCCACCaGU-GGGCGGUCGUu----------GUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 18029 0.71 0.172347
Target:  5'- uAGGUGGgcgCGcacgcgccgcCCCGuCCAGCGGCGCCu- -3'
miRNA:   3'- -UCCACCa--GU----------GGGC-GGUCGUUGUGGug -5'
27419 5' -58.4 NC_005869.1 + 20079 0.69 0.252127
Target:  5'- cGGUGGUCgACCUGCaggaCAGgAAUACCGa -3'
miRNA:   3'- uCCACCAG-UGGGCG----GUCgUUGUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.