miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27419 5' -58.4 NC_005869.1 + 21378 0.72 0.149379
Target:  5'- cGGcGGUCagggcauACgCCGCCGGCAGcCGCCGCu -3'
miRNA:   3'- uCCaCCAG-------UG-GGCGGUCGUU-GUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 23004 0.69 0.232795
Target:  5'- cAGG-GG-CACCUGgCGGCAGCcccaGCCGCa -3'
miRNA:   3'- -UCCaCCaGUGGGCgGUCGUUG----UGGUG- -5'
27419 5' -58.4 NC_005869.1 + 23420 0.66 0.37684
Target:  5'- cAGGg---CGCCgGCCGGCGGCuucaucuGCCGCa -3'
miRNA:   3'- -UCCaccaGUGGgCGGUCGUUG-------UGGUG- -5'
27419 5' -58.4 NC_005869.1 + 24240 0.66 0.396128
Target:  5'- gGGGcaUGGccgaccgCAUCCGCCuGCAGCgcgccgGCCGCa -3'
miRNA:   3'- -UCC--ACCa------GUGGGCGGuCGUUG------UGGUG- -5'
27419 5' -58.4 NC_005869.1 + 24400 0.67 0.318052
Target:  5'- cAGGaGGcCGCCC-CCGGCGcaGCCGCg -3'
miRNA:   3'- -UCCaCCaGUGGGcGGUCGUugUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 24973 0.66 0.363456
Target:  5'- uGGUGGUCagcgacgagcagcugGCCCGCUGGaugcACACCuCg -3'
miRNA:   3'- uCCACCAG---------------UGGGCGGUCgu--UGUGGuG- -5'
27419 5' -58.4 NC_005869.1 + 25764 1.08 0.00026
Target:  5'- cAGGUGGUCACCCGCCAGCAACACCACc -3'
miRNA:   3'- -UCCACCAGUGGGCGGUCGUUGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 25988 0.66 0.386864
Target:  5'- aGGGUGGagcCcUCCGCCuGCGuCAUCACg -3'
miRNA:   3'- -UCCACCa--GuGGGCGGuCGUuGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 26183 0.74 0.109384
Target:  5'- cAGGUGGUggccguccagaGCCCGCCuGCAGCGCUg- -3'
miRNA:   3'- -UCCACCAg----------UGGGCGGuCGUUGUGGug -5'
27419 5' -58.4 NC_005869.1 + 26564 0.69 0.24554
Target:  5'- --cUGGUCACCCgcaccuucauGCCGcGCAACgGCCGCa -3'
miRNA:   3'- uccACCAGUGGG----------CGGU-CGUUG-UGGUG- -5'
27419 5' -58.4 NC_005869.1 + 27373 0.71 0.187288
Target:  5'- --cUGGcCGCCCGCCgcuGGCAGgACCGCc -3'
miRNA:   3'- uccACCaGUGGGCGG---UCGUUgUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 27802 0.74 0.108126
Target:  5'- aAGGUGGUC-UUCGCCAGCcagauggacgcccGCACCACc -3'
miRNA:   3'- -UCCACCAGuGGGCGGUCGu------------UGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 30981 0.67 0.326129
Target:  5'- -uGUGuUCuccuCCCGCCGcuuguGCAGCACCACc -3'
miRNA:   3'- ucCACcAGu---GGGCGGU-----CGUUGUGGUG- -5'
27419 5' -58.4 NC_005869.1 + 33154 0.66 0.405534
Target:  5'- aGGGUGG-CGCaaGUgGGUccucaAACACCACa -3'
miRNA:   3'- -UCCACCaGUGggCGgUCG-----UUGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.