Results 21 - 34 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27419 | 5' | -58.4 | NC_005869.1 | + | 18029 | 0.71 | 0.172347 |
Target: 5'- uAGGUGGgcgCGcacgcgccgcCCCGuCCAGCGGCGCCu- -3' miRNA: 3'- -UCCACCa--GU----------GGGC-GGUCGUUGUGGug -5' |
|||||||
27419 | 5' | -58.4 | NC_005869.1 | + | 21378 | 0.72 | 0.149379 |
Target: 5'- cGGcGGUCagggcauACgCCGCCGGCAGcCGCCGCu -3' miRNA: 3'- uCCaCCAG-------UG-GGCGGUCGUU-GUGGUG- -5' |
|||||||
27419 | 5' | -58.4 | NC_005869.1 | + | 26183 | 0.74 | 0.109384 |
Target: 5'- cAGGUGGUggccguccagaGCCCGCCuGCAGCGCUg- -3' miRNA: 3'- -UCCACCAg----------UGGGCGGuCGUUGUGGug -5' |
|||||||
27419 | 5' | -58.4 | NC_005869.1 | + | 27802 | 0.74 | 0.108126 |
Target: 5'- aAGGUGGUC-UUCGCCAGCcagauggacgcccGCACCACc -3' miRNA: 3'- -UCCACCAGuGGGCGGUCGu------------UGUGGUG- -5' |
|||||||
27419 | 5' | -58.4 | NC_005869.1 | + | 17096 | 0.75 | 0.091884 |
Target: 5'- cGGUGGUgGCCCGgagcaCgGGCAugGCCACc -3' miRNA: 3'- uCCACCAgUGGGC-----GgUCGUugUGGUG- -5' |
|||||||
27419 | 5' | -58.4 | NC_005869.1 | + | 27373 | 0.71 | 0.187288 |
Target: 5'- --cUGGcCGCCCGCCgcuGGCAGgACCGCc -3' miRNA: 3'- uccACCaGUGGGCGG---UCGUUgUGGUG- -5' |
|||||||
27419 | 5' | -58.4 | NC_005869.1 | + | 16640 | 0.69 | 0.239097 |
Target: 5'- gGGGUGGggggCACcaccgCCGUCAGCcGCACCu- -3' miRNA: 3'- -UCCACCa---GUG-----GGCGGUCGuUGUGGug -5' |
|||||||
27419 | 5' | -58.4 | NC_005869.1 | + | 26564 | 0.69 | 0.24554 |
Target: 5'- --cUGGUCACCCgcaccuucauGCCGcGCAACgGCCGCa -3' miRNA: 3'- uccACCAGUGGG----------CGGU-CGUUG-UGGUG- -5' |
|||||||
27419 | 5' | -58.4 | NC_005869.1 | + | 13290 | 0.69 | 0.265737 |
Target: 5'- uAGGUguaGGUCGCCC-CCGGCAggaGCAgCAg -3' miRNA: 3'- -UCCA---CCAGUGGGcGGUCGU---UGUgGUg -5' |
|||||||
27419 | 5' | -58.4 | NC_005869.1 | + | 23420 | 0.66 | 0.37684 |
Target: 5'- cAGGg---CGCCgGCCGGCGGCuucaucuGCCGCa -3' miRNA: 3'- -UCCaccaGUGGgCGGUCGUUG-------UGGUG- -5' |
|||||||
27419 | 5' | -58.4 | NC_005869.1 | + | 17363 | 0.66 | 0.396128 |
Target: 5'- cGGcGGccgcCGCCCGCUc-CAGCGCCGCg -3' miRNA: 3'- uCCaCCa---GUGGGCGGucGUUGUGGUG- -5' |
|||||||
27419 | 5' | -58.4 | NC_005869.1 | + | 24240 | 0.66 | 0.396128 |
Target: 5'- gGGGcaUGGccgaccgCAUCCGCCuGCAGCgcgccgGCCGCa -3' miRNA: 3'- -UCC--ACCa------GUGGGCGGuCGUUG------UGGUG- -5' |
|||||||
27419 | 5' | -58.4 | NC_005869.1 | + | 33154 | 0.66 | 0.405534 |
Target: 5'- aGGGUGG-CGCaaGUgGGUccucaAACACCACa -3' miRNA: 3'- -UCCACCaGUGggCGgUCG-----UUGUGGUG- -5' |
|||||||
27419 | 5' | -58.4 | NC_005869.1 | + | 25764 | 1.08 | 0.00026 |
Target: 5'- cAGGUGGUCACCCGCCAGCAACACCACc -3' miRNA: 3'- -UCCACCAGUGGGCGGUCGUUGUGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home