Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27422 | 3' | -52 | NC_005869.1 | + | 24365 | 1.14 | 0.000513 |
Target: 5'- aCGCACACCGCGCUCAACUUACCUUGCg -3' miRNA: 3'- -GCGUGUGGCGCGAGUUGAAUGGAACG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 23080 | 0.79 | 0.148286 |
Target: 5'- gGCugGCCGCGCUCAugUggGCCc-GCg -3' miRNA: 3'- gCGugUGGCGCGAGUugAa-UGGaaCG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 16643 | 0.75 | 0.275801 |
Target: 5'- cCGUcgugGCGCCGCaGCUCAGCgcgGCCgcgGCg -3' miRNA: 3'- -GCG----UGUGGCG-CGAGUUGaa-UGGaa-CG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 31763 | 0.74 | 0.298777 |
Target: 5'- uCGUACACCGUGCcCGGCUgcaacuccACCUUGg -3' miRNA: 3'- -GCGUGUGGCGCGaGUUGAa-------UGGAACg -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 18087 | 0.73 | 0.376434 |
Target: 5'- aGCACcucgucGCUGuCGCUCAACccccgcuugGCCUUGCg -3' miRNA: 3'- gCGUG------UGGC-GCGAGUUGaa-------UGGAACG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 17383 | 0.7 | 0.49249 |
Target: 5'- aGCGCcgcgGCCGCGCUgAGCUgcggcgccacgacgGCCUgggGCc -3' miRNA: 3'- gCGUG----UGGCGCGAgUUGAa-------------UGGAa--CG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 28897 | 0.7 | 0.510111 |
Target: 5'- gCGCAUGCgCGUGCUCcACcagGCCcUGCa -3' miRNA: 3'- -GCGUGUG-GCGCGAGuUGaa-UGGaACG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 24998 | 0.7 | 0.521257 |
Target: 5'- aGCACAUCGCcaccaccCUCAAC-UACCU-GCa -3' miRNA: 3'- gCGUGUGGCGc------GAGUUGaAUGGAaCG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 21659 | 0.7 | 0.521257 |
Target: 5'- aCGUGC-CCGCGCUCcccAGCggggGCCU-GCa -3' miRNA: 3'- -GCGUGuGGCGCGAG---UUGaa--UGGAaCG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 17494 | 0.69 | 0.566697 |
Target: 5'- gCGCGCGCCGCGU---GC--GCCUcGCg -3' miRNA: 3'- -GCGUGUGGCGCGaguUGaaUGGAaCG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 15902 | 0.69 | 0.566697 |
Target: 5'- aGCGCGCCGcCGUUCAuCUgACUcgUGCc -3' miRNA: 3'- gCGUGUGGC-GCGAGUuGAaUGGa-ACG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 32153 | 0.69 | 0.566697 |
Target: 5'- cCGCu--CCGCGCUCGGCau-CCUgaugaUGCa -3' miRNA: 3'- -GCGuguGGCGCGAGUUGaauGGA-----ACG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 11787 | 0.69 | 0.58981 |
Target: 5'- cCGCAgGCgGCGCUguGCgguCCcUGCa -3' miRNA: 3'- -GCGUgUGgCGCGAguUGaauGGaACG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 24506 | 0.69 | 0.601432 |
Target: 5'- uGCAucauCAgUGCGCUCAGCcUGCCccucUGCa -3' miRNA: 3'- gCGU----GUgGCGCGAGUUGaAUGGa---ACG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 19028 | 0.68 | 0.613084 |
Target: 5'- aCGCgGCGCCGCGCgUCggUgacggUUACCcgcUGCa -3' miRNA: 3'- -GCG-UGUGGCGCG-AGuuG-----AAUGGa--ACG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 18549 | 0.68 | 0.613084 |
Target: 5'- gCGCgaagaacgGCGCCGCGCgCGGCggcGCCggGCu -3' miRNA: 3'- -GCG--------UGUGGCGCGaGUUGaa-UGGaaCG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 17590 | 0.68 | 0.624754 |
Target: 5'- gCGgGCGCCcgGCGCUUGACg-GCCgUGCg -3' miRNA: 3'- -GCgUGUGG--CGCGAGUUGaaUGGaACG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 13968 | 0.68 | 0.624754 |
Target: 5'- uGCAgucgacCACCGCGUUgAGCUgagagGCCUgaccgGCu -3' miRNA: 3'- gCGU------GUGGCGCGAgUUGAa----UGGAa----CG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 22949 | 0.68 | 0.643436 |
Target: 5'- aGCGCcCCGaccCGCUCAGCgcgaagggggugAUCUUGCa -3' miRNA: 3'- gCGUGuGGC---GCGAGUUGaa----------UGGAACG- -5' |
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27422 | 3' | -52 | NC_005869.1 | + | 9609 | 0.68 | 0.648105 |
Target: 5'- uCGCGCACC-UGCUCuuCggACCcgGCg -3' miRNA: 3'- -GCGUGUGGcGCGAGuuGaaUGGaaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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