miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27422 3' -52 NC_005869.1 + 2575 0.66 0.772566
Target:  5'- gGCucgGCGCUGCGCcCAGCg---CUUGCg -3'
miRNA:   3'- gCG---UGUGGCGCGaGUUGaaugGAACG- -5'
27422 3' -52 NC_005869.1 + 9609 0.68 0.648105
Target:  5'- uCGCGCACC-UGCUCuuCggACCcgGCg -3'
miRNA:   3'- -GCGUGUGGcGCGAGuuGaaUGGaaCG- -5'
27422 3' -52 NC_005869.1 + 9950 0.67 0.671388
Target:  5'- gGC-CACCacGCGCUCGGCcaggaugGCCU-GCg -3'
miRNA:   3'- gCGuGUGG--CGCGAGUUGaa-----UGGAaCG- -5'
27422 3' -52 NC_005869.1 + 11787 0.69 0.58981
Target:  5'- cCGCAgGCgGCGCUguGCgguCCcUGCa -3'
miRNA:   3'- -GCGUgUGgCGCGAguUGaauGGaACG- -5'
27422 3' -52 NC_005869.1 + 13968 0.68 0.624754
Target:  5'- uGCAgucgacCACCGCGUUgAGCUgagagGCCUgaccgGCu -3'
miRNA:   3'- gCGU------GUGGCGCGAgUUGAa----UGGAa----CG- -5'
27422 3' -52 NC_005869.1 + 14339 0.67 0.671388
Target:  5'- gGCACcggGCUGCGCcaUCGACUUcACCUUc- -3'
miRNA:   3'- gCGUG---UGGCGCG--AGUUGAA-UGGAAcg -5'
27422 3' -52 NC_005869.1 + 15483 0.66 0.772566
Target:  5'- gCGC-CGCCGCGCgCGGCgccguUCUUcGCg -3'
miRNA:   3'- -GCGuGUGGCGCGaGUUGaau--GGAA-CG- -5'
27422 3' -52 NC_005869.1 + 15602 0.66 0.739818
Target:  5'- gGCGCuCCGCGC-CGGCcauCCUgggggUGCg -3'
miRNA:   3'- gCGUGuGGCGCGaGUUGaauGGA-----ACG- -5'
27422 3' -52 NC_005869.1 + 15784 0.66 0.761795
Target:  5'- gGCACcgaCGCGCUCGGCcaugGCCaucucGCg -3'
miRNA:   3'- gCGUGug-GCGCGAGUUGaa--UGGaa---CG- -5'
27422 3' -52 NC_005869.1 + 15902 0.69 0.566697
Target:  5'- aGCGCGCCGcCGUUCAuCUgACUcgUGCc -3'
miRNA:   3'- gCGUGUGGC-GCGAGUuGAaUGGa-ACG- -5'
27422 3' -52 NC_005869.1 + 16643 0.75 0.275801
Target:  5'- cCGUcgugGCGCCGCaGCUCAGCgcgGCCgcgGCg -3'
miRNA:   3'- -GCG----UGUGGCG-CGAGUUGaa-UGGaa-CG- -5'
27422 3' -52 NC_005869.1 + 17383 0.7 0.49249
Target:  5'- aGCGCcgcgGCCGCGCUgAGCUgcggcgccacgacgGCCUgggGCc -3'
miRNA:   3'- gCGUG----UGGCGCGAgUUGAa-------------UGGAa--CG- -5'
27422 3' -52 NC_005869.1 + 17494 0.69 0.566697
Target:  5'- gCGCGCGCCGCGU---GC--GCCUcGCg -3'
miRNA:   3'- -GCGUGUGGCGCGaguUGaaUGGAaCG- -5'
27422 3' -52 NC_005869.1 + 17590 0.68 0.624754
Target:  5'- gCGgGCGCCcgGCGCUUGACg-GCCgUGCg -3'
miRNA:   3'- -GCgUGUGG--CGCGAGUUGaaUGGaACG- -5'
27422 3' -52 NC_005869.1 + 17878 0.67 0.671388
Target:  5'- uGC-CGCCGgGCUCu-CUUGCCauaaGCa -3'
miRNA:   3'- gCGuGUGGCgCGAGuuGAAUGGaa--CG- -5'
27422 3' -52 NC_005869.1 + 18035 0.66 0.728639
Target:  5'- gGCGCGCaCGCGCcgccccgucCAGCggcGCCUgggGCg -3'
miRNA:   3'- gCGUGUG-GCGCGa--------GUUGaa-UGGAa--CG- -5'
27422 3' -52 NC_005869.1 + 18087 0.73 0.376434
Target:  5'- aGCACcucgucGCUGuCGCUCAACccccgcuugGCCUUGCg -3'
miRNA:   3'- gCGUG------UGGC-GCGAGUUGaa-------UGGAACG- -5'
27422 3' -52 NC_005869.1 + 18198 0.66 0.728639
Target:  5'- cCGUACACCucggGCGC-CAAC--GCCU-GCa -3'
miRNA:   3'- -GCGUGUGG----CGCGaGUUGaaUGGAaCG- -5'
27422 3' -52 NC_005869.1 + 18549 0.68 0.613084
Target:  5'- gCGCgaagaacgGCGCCGCGCgCGGCggcGCCggGCu -3'
miRNA:   3'- -GCG--------UGUGGCGCGaGUUGaa-UGGaaCG- -5'
27422 3' -52 NC_005869.1 + 19028 0.68 0.613084
Target:  5'- aCGCgGCGCCGCGCgUCggUgacggUUACCcgcUGCa -3'
miRNA:   3'- -GCG-UGUGGCGCG-AGuuG-----AAUGGa--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.